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Ensure we remove null ExpData IDs
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SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/OrphanFilePipelineJob.java

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@@ -161,6 +161,7 @@ public boolean isJobComplete(PipelineJob job)
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knownExpDatas.addAll(new TableSelector(us.getTable(SequenceAnalysisSchema.TABLE_READ_DATA, null), PageFlowUtil.set("fileid2"),null, null).getArrayList(Integer.class));
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knownExpDatas.addAll(new TableSelector(us.getTable(SequenceAnalysisSchema.TABLE_ANALYSES, null), PageFlowUtil.set("alignmentfile"),null, null).getArrayList(Integer.class));
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knownExpDatas.addAll(new TableSelector(us.getTable(SequenceAnalysisSchema.TABLE_OUTPUTFILES, null), PageFlowUtil.set("dataId"),null, null).getArrayList(Integer.class));
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knownExpDatas.remove(null);
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knownExpDatas = Collections.unmodifiableSet(knownExpDatas);
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//messages.add("## total registered sequence ExpData: " + knownExpDatas.size());
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