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Use ExtendedVariantTrack instead of VariantTrack
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jbrowse/src/org/labkey/jbrowse/model/JsonFile.java

Lines changed: 12 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -495,7 +495,7 @@ private JSONObject getVcfTrack(Logger log, ExpData targetFile, ReferenceGenome r
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}
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ret.put("adapter", new JSONObject(){{
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put("type", "VcfTabixAdapter");
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put("type", "ExtendedVariantAdapter");
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put("vcfGzLocation", new JSONObject(){{
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put("uri", url);
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}});
@@ -508,6 +508,17 @@ private JSONObject getVcfTrack(Logger log, ExpData targetFile, ReferenceGenome r
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}});
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}});
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ret.put("displays", new JSONArray(){{
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put(new JSONObject(){{
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put("type", "ExtendedVariantDisplay");
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put("displayId", getTrackId() + "-ExtendedVariantDisplay");
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put("renderer", new JSONObject(){{
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put("type", "ExtendedVariantRenderer");
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put("showLabels", false);
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}});
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}});
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}});
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return ret;
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}
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