Reduce output to seurat descriptions

bbimber · bbimber · commit 2a69db941b62 · 2022-08-30T12:33:52.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/analysis/AbstractSingleCellHandler.java b/singlecell/src/org/labkey/singlecell/analysis/AbstractSingleCellHandler.java
@@ -1042,13 +1042,13 @@ else if ("NotUsed".equals(val))
         }
 
         String hashingMethods = ctx.getParams().optString("singleCell.RunCellHashing.consensusMethods");
-        if (hashingMethods != null)
+        if (StringUtils.trimToNull(hashingMethods) != null)
         {
             descriptions.add("Hashing: " + hashingMethods);
         }
 
         String citeNormalize = ctx.getParams().optString("singleCell.AppendCiteSeq.normalizeMethod");
-        if (citeNormalize != null)
+        if (StringUtils.trimToNull(citeNormalize) != null)
         {
             descriptions.add("Cite-seq Normalization: " + citeNormalize);
         }

Original file line number	Diff line number	Diff line change
`@@ -1042,13 +1042,13 @@ else if ("NotUsed".equals(val))`
`1042`	`1042`	`}`
`1043`	`1043`
`1044`	`1044`	`String hashingMethods = ctx.getParams().optString("singleCell.RunCellHashing.consensusMethods");`
`1045`		`- if (hashingMethods != null)`
	`1045`	`+ if (StringUtils.trimToNull(hashingMethods) != null)`
`1046`	`1046`	`{`
`1047`	`1047`	`descriptions.add("Hashing: " + hashingMethods);`
`1048`	`1048`	`}`
`1049`	`1049`
`1050`	`1050`	`String citeNormalize = ctx.getParams().optString("singleCell.AppendCiteSeq.normalizeMethod");`
`1051`		`- if (citeNormalize != null)`
	`1051`	`+ if (StringUtils.trimToNull(citeNormalize) != null)`
`1052`	`1052`	`{`
`1053`	`1053`	`descriptions.add("Cite-seq Normalization: " + citeNormalize);`
`1054`	`1054`	`}`