Update nimble settings

bbimber · bbimber · commit 2a6016ab4df1 · 2024-11-07T10:11:06.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java b/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java
@@ -361,7 +361,7 @@ else if ("strict".equals(alignTemplate))
                 config.put("num_mismatches", 0);
                 config.put("intersect_level", 0);
                 // NOTE: this allows a small amount of mismatched ends:
-                config.put("score_percent", 0.90);
+                config.put("score_percent", 0.99);
                 config.put("score_threshold", 45);
                 config.put("score_filter", 25);
             }

Original file line number	Diff line number	Diff line change
`@@ -361,7 +361,7 @@ else if ("strict".equals(alignTemplate))`
`361`	`361`	`config.put("num_mismatches", 0);`
`362`	`362`	`config.put("intersect_level", 0);`
`363`	`363`	`// NOTE: this allows a small amount of mismatched ends:`
`364`		`- config.put("score_percent", 0.90);`
	`364`	`+ config.put("score_percent", 0.99);`
`365`	`365`	`config.put("score_threshold", 45);`
`366`	`366`	`config.put("score_filter", 25);`
`367`	`367`	`}`