Correctly copy molInfo file locally to cluster

bbimber · bbimber · commit 292dfb5df22a · 2021-10-30T09:36:35.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java b/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java
@@ -979,7 +979,7 @@ public File generateCellHashingCalls(File citeSeqCountOutDir, File outputDir, St
             throw new PipelineJobException("File not found, cannot calculate saturation: " + molInfo.getPath());
         }
 
-        molInfo = ensureLocalCopy(citeSeqCountOutDir, outputDir, log, toDelete);
+        molInfo = ensureLocalCopy(molInfo, outputDir, log, toDelete);
 
         citeSeqCountOutDir = ensureLocalCopy(citeSeqCountOutDir, outputDir, log, toDelete);
 

Original file line number	Diff line number	Diff line change
`@@ -979,7 +979,7 @@ public File generateCellHashingCalls(File citeSeqCountOutDir, File outputDir, St`
`979`	`979`	`throw new PipelineJobException("File not found, cannot calculate saturation: " + molInfo.getPath());`
`980`	`980`	`}`
`981`	`981`
`982`		`- molInfo = ensureLocalCopy(citeSeqCountOutDir, outputDir, log, toDelete);`
	`982`	`+ molInfo = ensureLocalCopy(molInfo, outputDir, log, toDelete);`
`983`	`983`
`984`	`984`	`citeSeqCountOutDir = ensureLocalCopy(citeSeqCountOutDir, outputDir, log, toDelete);`
`985`	`985`