Bugfix when doSraDownloadIfNeeded not provided

bbimber · bbimber · commit 2742759d6231 · 2024-08-04T12:46:33.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceJob.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceJob.java
@@ -113,7 +113,7 @@ protected SequenceJob(SequenceJob parentJob, String jobName, String subdirectory
 
     protected boolean shouldAllowArchivedReadsets()
     {
-        return ("true".equals(_params.get("doSraDownloadIfNeeded")));
+        return ("true".equals(_params.optString("doSraDownloadIfNeeded")));
     }
 
     public SequenceJob(String providerName, Container c, User u, @Nullable String jobName, PipeRoot pipeRoot, JSONObject params, TaskId taskPipelineId, String folderPrefix) throws IOException

Original file line number	Diff line number	Diff line change
`@@ -113,7 +113,7 @@ protected SequenceJob(SequenceJob parentJob, String jobName, String subdirectory`
`113`	`113`
`114`	`114`	`protected boolean shouldAllowArchivedReadsets()`
`115`	`115`	`{`
`116`		`- return ("true".equals(_params.get("doSraDownloadIfNeeded")));`
	`116`	`+ return ("true".equals(_params.optString("doSraDownloadIfNeeded")));`
`117`	`117`	`}`
`118`	`118`
`119`	`119`	`public SequenceJob(String providerName, Container c, User u, @Nullable String jobName, PipeRoot pipeRoot, JSONObject params, TaskId taskPipelineId, String folderPrefix) throws IOException`