Fix path

bbimber · bbimber · commit 1d2e55865aba · 2022-02-09T09:22:40.000-08:00
diff --git a/singlecell/resources/chunks/PrepareRawCounts.R b/singlecell/resources/chunks/PrepareRawCounts.R
@@ -7,7 +7,7 @@ for (datasetId in names(seuratObjects)) {
     if (useCellBender) {
         # This is the 10x project:
         print('Will use cellbender-adjusted counts instead of raw counts:')
-        previouslyFilteredMatrix <- paste0(rawCountDir, 'raw_feature_bc_matrix.cellbender_filtered.h5')
+        previouslyFilteredMatrix <- paste0(rawCountDir, '/raw_feature_bc_matrix.cellbender_filtered.h5')
         if (!file.exists(previouslyFilteredMatrix)) {
             stop(paste0('Unable to find file: ', previouslyFilteredMatrix, '. You can re-run cellbender to fix this.'))
         }

Original file line number	Diff line number	Diff line change
`@@ -7,7 +7,7 @@ for (datasetId in names(seuratObjects)) {`
`7`	`7`	`if (useCellBender) {`
`8`	`8`	`# This is the 10x project:`
`9`	`9`	`print('Will use cellbender-adjusted counts instead of raw counts:')`
`10`		`- previouslyFilteredMatrix <- paste0(rawCountDir, 'raw_feature_bc_matrix.cellbender_filtered.h5')`
	`10`	`+ previouslyFilteredMatrix <- paste0(rawCountDir, '/raw_feature_bc_matrix.cellbender_filtered.h5')`
`11`	`11`	`if (!file.exists(previouslyFilteredMatrix)) {`
`12`	`12`	`stop(paste0('Unable to find file: ', previouslyFilteredMatrix, '. You can re-run cellbender to fix this.'))`
`13`	`13`	`}`