Skip to content

Commit 13a6719

Browse files
committed
Add debugging is leidenalg not found
1 parent fb63b35 commit 13a6719

File tree

1 file changed

+7
-0
lines changed

1 file changed

+7
-0
lines changed

singlecell/resources/chunks/FindClustersAndDimRedux.R

Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,10 @@
1+
if (!reticulate::py_module_available(module = 'leidenalg')) {
2+
logger::log_warn('python leidenalg not found!')
3+
logger::log_warn(paste0('Python available: ', reticulate::py_available()))
4+
logger::log_warn(reticulate::py_config())
5+
logger::log_warn(paste0('installed packages: ', paste0(reticulate::py_list_packages()$package, collapse = ', ')))
6+
}
7+
18
for (datasetId in names(seuratObjects)) {
29
printName(datasetId)
310
seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])

0 commit comments

Comments
 (0)