Bugfix to ExtendedVcfFeature when input lacks ANN field

bbimber · bbimber · commit 116d563171a5 · 2021-09-23T11:01:30.000-07:00
diff --git a/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantAdapter/VcfFeature.ts b/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantAdapter/VcfFeature.ts
@@ -16,7 +16,7 @@ export default class ExtendedVcfFeature extends VcfFeature {
         ID: string[]
     }) {
         if (!variant.INFO["ANN"]) {
-            return;
+            return(variant);
         }
 
         let IMPACTs = new Set<String>()

Original file line number	Diff line number	Diff line change
`@@ -16,7 +16,7 @@ export default class ExtendedVcfFeature extends VcfFeature {`
`16`	`16`	`ID: string[]`
`17`	`17`	`}) {`
`18`	`18`	`if (!variant.INFO["ANN"]) {`
`19`		`- return;`
	`19`	`+ return(variant);`
`20`	`20`	`}`
`21`	`21`
`22`	`22`	`let IMPACTs = new Set<String>()`