Bugfix to feature count generation

bbimber · bbimber · commit 0d05fb0d048b · 2021-12-22T14:50:47.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java b/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java
@@ -96,7 +96,7 @@ public void prepareHashingForVdjIfNeeded(File sourceDir, PipelineJob job, Sequen
 
     public void prepareHashingAndCiteSeqFilesForFeatureCountsIfNeeded(File sourceDir, PipelineJob job, SequenceAnalysisJobSupport support, String filterField, final boolean failIfNoHashingReadset, final boolean failIfNoCiteSeqReadset) throws PipelineJobException
     {
-        prepareHashingAndCiteSeqFilesIfNeeded(sourceDir, job, support, filterField, failIfNoHashingReadset, failIfNoCiteSeqReadset, true, false, false, false);
+        prepareHashingAndCiteSeqFilesIfNeeded(sourceDir, job, support, filterField, failIfNoHashingReadset, failIfNoCiteSeqReadset, false, false, false, false);
     }
 
     public void prepareHashingAndCiteSeqFilesIfNeeded(File sourceDir, PipelineJob job, SequenceAnalysisJobSupport support, String filterField, final boolean failIfNoHashingReadset, final boolean failIfNoCiteSeqReadset, final boolean cacheCountMatrixFiles, boolean requireExistingHashingCountsIfUsed, boolean requireExistingCiteSeqCountIfUsed, boolean doH5Caching) throws PipelineJobException

Original file line number	Diff line number	Diff line change
`@@ -96,7 +96,7 @@ public void prepareHashingForVdjIfNeeded(File sourceDir, PipelineJob job, Sequen`
`96`	`96`
`97`	`97`	`public void prepareHashingAndCiteSeqFilesForFeatureCountsIfNeeded(File sourceDir, PipelineJob job, SequenceAnalysisJobSupport support, String filterField, final boolean failIfNoHashingReadset, final boolean failIfNoCiteSeqReadset) throws PipelineJobException`
`98`	`98`	`{`
`99`		`- prepareHashingAndCiteSeqFilesIfNeeded(sourceDir, job, support, filterField, failIfNoHashingReadset, failIfNoCiteSeqReadset, true, false, false, false);`
	`99`	`+ prepareHashingAndCiteSeqFilesIfNeeded(sourceDir, job, support, filterField, failIfNoHashingReadset, failIfNoCiteSeqReadset, false, false, false, false);`
`100`	`100`	`}`
`101`	`101`
`102`	`102`	`public void prepareHashingAndCiteSeqFilesIfNeeded(File sourceDir, PipelineJob job, SequenceAnalysisJobSupport support, String filterField, final boolean failIfNoHashingReadset, final boolean failIfNoCiteSeqReadset, final boolean cacheCountMatrixFiles, boolean requireExistingHashingCountsIfUsed, boolean requireExistingCiteSeqCountIfUsed, boolean doH5Caching) throws PipelineJobException`