Remove unused dependencies

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/AASnpByCodonAggregator.java

@@ -18,7 +18,6 @@
 import htsjdk.samtools.SAMRecord;
 import htsjdk.samtools.reference.ReferenceSequence;
 import org.apache.logging.log4j.Logger;
-import org.apache.logging.log4j.LogManager;
 import org.labkey.api.data.Container;
 import org.labkey.api.data.DbScope;
 import org.labkey.api.data.SimpleFilter;
@@ -31,7 +30,6 @@
 import org.labkey.api.sequenceanalysis.model.AnalysisModel;
 import org.labkey.api.util.Pair;
 import org.labkey.sequenceanalysis.SequenceAnalysisSchema;
-import org.labkey.sequenceanalysis.api.picard.CigarPositionIterable;
 import org.labkey.sequenceanalysis.run.util.AASnp;
 import org.labkey.sequenceanalysis.run.util.NTSnp;
 

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/AASnpByReadAggregator.java

@@ -3,13 +3,11 @@
 import htsjdk.samtools.SAMRecord;
 import htsjdk.samtools.reference.ReferenceSequence;
 import org.apache.logging.log4j.Logger;
-import org.apache.logging.log4j.LogManager;
 import org.labkey.api.data.Container;
 import org.labkey.api.pipeline.PipelineJobException;
 import org.labkey.api.security.User;
 import org.labkey.api.sequenceanalysis.model.AnalysisModel;
 import org.labkey.api.util.Pair;
-import org.labkey.sequenceanalysis.api.picard.CigarPositionIterable;
 import org.labkey.sequenceanalysis.run.util.AASnp;
 import org.labkey.sequenceanalysis.run.util.NTSnp;