Bugfix to OrphanFilePipelineJob

bbimber · bbimber · commit 0b2a759f870b · 2024-10-01T13:41:32.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/OrphanFilePipelineJob.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/OrphanFilePipelineJob.java
@@ -544,7 +544,7 @@ private void getOrphanFilesForDirectory(Set<Integer> knownExpDatas, Map<URI, Set
                 {
                     if (f.getName().endsWith(".gdb"))
                     {
-                        if (!knownExpDatas.contains(new File(f, "__tiledb_workspace.tdb").toURI()))
+                        if (!dataMap.containsKey(new File(f, "__tiledb_workspace.tdb").toURI()))
                         {
                             orphanSequenceFiles.add(f);
                         }

Original file line number	Diff line number	Diff line change
`@@ -544,7 +544,7 @@ private void getOrphanFilesForDirectory(Set<Integer> knownExpDatas, Map<URI, Set`
`544`	`544`	`{`
`545`	`545`	`if (f.getName().endsWith(".gdb"))`
`546`	`546`	`{`
`547`		`- if (!knownExpDatas.contains(new File(f, "__tiledb_workspace.tdb").toURI()))`
	`547`	`+ if (!dataMap.containsKey(new File(f, "__tiledb_workspace.tdb").toURI()))`
`548`	`548`	`{`
`549`	`549`	`orphanSequenceFiles.add(f);`
`550`	`550`	`}`