Allow seurat pipeline to be kicked off against 10x Run Summaries

bbimber · bbimber · commit 075a2ee805e3 · 2024-08-16T11:38:02.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/analysis/ProcessSingleCellHandler.java b/singlecell/src/org/labkey/singlecell/analysis/ProcessSingleCellHandler.java
@@ -23,7 +23,10 @@ public String getName()
     @Override
     public boolean canProcess(SequenceOutputFile f)
     {
-        return f.getFile() != null && LOUPE_TYPE.isType(f.getFile());
+        return f.getFile() != null && (
+                LOUPE_TYPE.isType(f.getFile()) ||
+                ("10x Run Summary".equals(f.getCategory()) && f.getName().contains("10x Count Summary"))
+        );
     }
 
     @Override

Original file line number	Diff line number	Diff line change
`@@ -23,7 +23,10 @@ public String getName()`
`23`	`23`	`@Override`
`24`	`24`	`public boolean canProcess(SequenceOutputFile f)`
`25`	`25`	`{`
`26`		`- return f.getFile() != null && LOUPE_TYPE.isType(f.getFile());`
	`26`	`+ return f.getFile() != null && (`
	`27`	`+ LOUPE_TYPE.isType(f.getFile()) \|\|`
	`28`	`+ ("10x Run Summary".equals(f.getCategory()) && f.getName().contains("10x Count Summary"))`
	`29`	`+ );`
`27`	`30`	`}`
`28`	`31`
`29`	`32`	`@Override`