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Improve ETLs to filter non-SIV data
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-4
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3 files changed

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IDR/resources/queries/bimber_data/idrAnchorDateSource.sql

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@@ -7,7 +7,7 @@ PID0 as date,
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FROM bimber_data.subjects
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WHERE PID0 IS NOT NULL
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AND Cohort NOT IN ('PC549', 'PC585') AND Cohort NOT LIKE 'W%'
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AND Cohort NOT IN ('PC549', 'PC585', 'PC529') AND Cohort NOT LIKE 'W%'
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UNION ALL
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@@ -20,4 +20,4 @@ D0 as date,
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FROM bimber_data.subjects
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WHERE D0 IS NOT NULL
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AND Cohort NOT IN ('PC549', 'PC585') AND Cohort NOT LIKE 'W%'
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AND Cohort NOT IN ('PC549', 'PC585', 'PC529') AND Cohort NOT LIKE 'W%'

IDR/resources/queries/bimber_data/idrOutcomeSource.sql

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@@ -13,4 +13,4 @@ END as outcome,
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FROM bimber_data.subjects
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WHERE contprog IS NOT NULL AND contprog != ''
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AND Cohort NOT IN ('PC549', 'PC585') AND Cohort NOT LIKE 'W%'
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AND Cohort NOT IN ('PC549', 'PC585', 'PC529') AND Cohort NOT LIKE 'W%'

SivStudies/resources/etls/idr-data.xml

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@@ -125,7 +125,7 @@
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<setting name="dataSourceColumns" value="Rh,PID0"/>
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<setting name="dataSourceColumnMapping" value="Rh=Id,PID0=date"/>
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<setting name="dataSourceColumnDefaults" value="dataSource=Hansen/IDR;category=SIV Infection;treatment=SIV - Unknown"/>
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<setting name="dataSourceAdditionalFilters" value="PID0~isnonblank=;Cohort~neqornull=PC549;Cohort~neqornull=PC585;Cohort~neqornull=W1170;Cohort~neqornull=W1173"/>
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<setting name="dataSourceAdditionalFilters" value="PID0~isnonblank=;Cohort~neqornull=PC549;Cohort~neqornull=PC585;Cohort~neqornull=W1170;Cohort~neqornull=W1173;Cohort~neqornull=PC529"/>
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<setting name="targetSchema" value="study"/>
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<setting name="targetQuery" value="treatments"/>

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