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Merge pull request #180 from LabKey/fb_merge_23.7_to_develop
Merge discvr-23.7 to develop
2 parents 3dfea00 + 72a7fa3 commit b502939

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‎PMR/resources/data/ageclass.tsv‎

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label ageclass gender species min max
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Infant 1 ANUBIS BABOON 0 1
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Infant 1 Cynomolgus 0 1
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Infant 1 Marmoset 0 1
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Infant 1 HAMADRYAS BABOON 0 1
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Infant 1 JAPANESE MACAQUE 0 1
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Infant 1 Rhesus 0 1
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Juvenile 2 m ANUBIS BABOON 1 3
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Juvenile 2 m Cynomolgus 1 3
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Juvenile 2 m Marmoset 1 3
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Juvenile 2 m HAMADRYAS BABOON 1 3
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Juvenile 2 m JAPANESE MACAQUE 1 3
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Juvenile 2 m Rhesus 1 3
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Juvenile 2 f ANUBIS BABOON 1 4
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Juvenile 2 f Cynomolgus 1 4
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Juvenile 2 f Marmoset 1 4
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Juvenile 2 f HAMADRYAS BABOON 1 4
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Juvenile 2 f JAPANESE MACAQUE 1 4
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Juvenile 2 f Rhesus 1 4
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Adult 3 m ANUBIS BABOON 3 18
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Adult 3 m Cynomolgus 3 18
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Adult 3 m Marmoset 3 18
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Adult 3 m HAMADRYAS BABOON 3 18
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Adult 3 m JAPANESE MACAQUE 3 18
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Adult 3 m Rhesus 3 18
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Adult 3 f ANUBIS BABOON 4 18
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Adult 3 f Cynomolgus 4 18
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Adult 3 f Marmoset 4 18
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Adult 3 f HAMADRYAS BABOON 4 18
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Adult 3 f JAPANESE MACAQUE 4 18
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Adult 3 f Rhesus 4 18
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Senior 4 ANUBIS BABOON 18
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Senior 4 Cynomolgus 18
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Senior 4 Marmoset 18
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Senior 4 HAMADRYAS BABOON 18
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Senior 4 JAPANESE MACAQUE 18
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Senior 4 Rhesus 18

‎PMR/resources/data/amount_units.tsv‎

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unit
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g
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IU
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U
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mEq
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mg
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no units
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ug
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units
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L/min
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%

‎PMR/resources/data/birth_type.tsv‎

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value
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Vaginal
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C-Section
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No Delivery - Fetus Resorbed
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No Delivery - Fetus Recovered
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No Delivery - Number Assigned In Utero
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Fetus Not Recovered
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Other

‎PMR/resources/data/conc_units.tsv‎

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unit denominator numerator
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g/ml mL g
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g/tsp tsp g
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IU/ml mL IU
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mEq/ml mL mEq
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mg/capsule capsule(s) mg
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mg/ml mL mg
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mg/piece piece(s) mg
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mg/tablet tablet(s) mg
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mg/tsp tsp mg
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ug/ml mL ug
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units/ml mL units

‎PMR/resources/data/death_cause.tsv‎

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value title category description sort_order date_disabled
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Spontaneous Death 1
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Sudden Infant Death 5
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Accidental Death 13
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Death Due to Fight 14
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Acute Surgical Death 6
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Postoperative Death 7
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Dead On Arrival 15
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Unplanned Experimental Death 8
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Perinatal Death 2
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Postpartum Death 9
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Death in Quarantine 12
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Undetermined Cause 10
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Unclassified Cause 11
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Abortion ( < 130 days gestation ) 17
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Spontaneous Death, Experimental subject 22
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Neonatal death (<28 days of age, breathed once) 28
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Spontaneous Death in quarantine 24
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Stillbirth ( > 130 days gestation, never breathed) 16
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Cause of Death Unknown 99
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EUTHANASIA, EXPERIMENTAL 3
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EUTHANASIA, NONEXPERIMENTAL 4
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EUTHANASIA, QUARANTINE 3
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Medical Termination 30
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Miscarriage 32
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Biochemical Pregnancy 35

‎PMR/resources/data/death_manner.tsv‎

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value title category description sort_order date_disabled
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Died during experimental procedure
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Died during medical treatment
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Died in utero
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Euthanasia
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Found dead

‎PMR/resources/data/dosage_units.tsv‎

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unit numerator denominator
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g/kg g kg
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IU/kg IU kg
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mEq/kg mEq kg
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mg/animal mg
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mg/kg mg kg
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ml/kg ml kg
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no units
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ounces/kg ounces kg
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ug/kg ug kg
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units/kg units kg

‎PMR/resources/data/gender_codes.tsv‎

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code meaning origgender
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f Female f
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h Hermaphrodite
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m Male m
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u Unknown

‎PMR/resources/data/geographic_origins.tsv‎

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meaning
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AFRICA
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ARABIAN PENINSULA
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ARGENTINA
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BOLIVIA
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BRAZIL
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CAMBODIA
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CARIBBEAN
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CELEBES IS./INDONES
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CENTRAL AFRICA
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CENTRAL AMERICA
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CHINA
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COLUMBIA
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CONGO
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EAST AFRICA
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EQUADOR
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GHANA
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INDIA
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INDONESIA
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JAPAN
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KENYA
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MALAGASY REPUBLIC
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MAURITIUS, REPUBLIC OF
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NIGERIA
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ORIGIN UNKNOWN
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PERU
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PHILIPPINES
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RUSSIA
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SOUTH AMERICA
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SPAIN
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THIALAND
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USA

‎PMR/resources/data/lookup_sets.tsv‎

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setname label keyfield titleColumn
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PregnancyConfirm Pregnancy Confirmation Types
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housingDefinition Housing Definition
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housingTypes Housing Types
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AcquistionType Acquistion Types value
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RearingType Rearing Types
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MatingType Mating Types
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pairingEventType Pairing Event Types value
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tb_method TB Test Methods value
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microbiologyQuantity Microbiology Quantity value
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blood_sample_type Blood Sample Types value
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pairingHousingType Pairing Housing Types value
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pairingOutcome Pairing Outcomes value
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pairingGoal Pairing Goal value
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pairingObservation Pairing Observations value
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antibioticSensitivityResult Antibiotic Sensitivity Result value
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pairingSeparationReason Pairing Separation Reason value
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tissue_preparation Tissue Preparation value
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tissue_condition Tissue Condition value
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drugReason Drug Reason value
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serologyMethod Serology Methods value
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TransferReason Transfer Reasons
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assignmentReleaseType Assignment Release Types value
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animalGroupReleaseType Animal Group Release Types value
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observation_areas Observation Areas value
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drugOutcome Drug Administration Outcomes value
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encounterSummaryCategory Encounter Summary Category value
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labworkChargeType Labwork Charge Types value
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notes_category DCM Notes Category value
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blood_draw_reason Blood Draw Reason value
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encounter_roles Encounter Roles value
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parentageRelationship Parentage Relationship value
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parentageMethod Parentage Determination Methods value
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serologyResultQualifier Serology Result Qualifier value
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app_score Appetite Score value
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att_score Attitude Score value
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turgor_score Turgor Score value
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hyd_score Hyd Score value
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stool_score Stool Score value
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sib_score SIB Score value
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incision_score Incision Score value
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alopecia_type Alopecia Type value
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alopecia_score Alopecia Type value
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alopecia_regrowth Alopecia Regrowth value
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mens_score Mens Score value
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tissue_sample_type Tissue Distribution Sample Type value
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tissue_distribution_category Tissue Distribution Request Category value
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cage_status Cage Status value
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project_use_category Center Project Use Categories value
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project_type Center Project Types value
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procedure_drug_templates Procedure Drug Templates value
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behavior_types Behavior Types value
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fecal_smear_score Fecal Smear Scores value
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problem_list_subcategory Problem List Subcategory value
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customer_affiliation Customer Affiliation value
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birth_date_type Birth Date Type value
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birth_type Birth Type Field Values value
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chemistry_method Chemistry Method Field Values value
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clinpath_sampletype Clinpath Sample Type Field Values value
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clinpath_types Clinpath Type Field Values value
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clinremarks_category Clinremarks Category Field Values value
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drug_categories Drug Category Field Values value
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hematology_method Hematology Method Field Values value
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problem_list_category Problem List Category Field Values value
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parasitology_method Parasitology Method Field Values value
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urinalysis_method Urinalysis Method Field Values value
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urinalysis_qualitative_results Urinalysis Qualitative Result Field Values value
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bcs_score BCS Score Field Values value
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avail_codes Availability Code Field Values value
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status_codes Status Code Field Values value
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snomed_qualifiers SNOMED Code Qualifiers value
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housing_reason Housing Reason Field Values value
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housing_condition_codes Housing Condition Field Values value
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histology_stain Histology Stain Field Values value
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encounter_types Encounter Types value
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DeliveryMode Delivery Mode Field Values value
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DeliveryType Delivery Type Field Values value
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death_manner Death Manner value
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death_cause Death Cause value
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ConfirmationType Pregnancy Confirmation Type value
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clinpath_collection_method Clinpath Collection Method value

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