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Drop sudo from docker
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primeseq/resources/external/comb-p/combpWrapper.sh

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Original file line numberDiff line numberDiff line change
@@ -18,4 +18,4 @@ DOCKER=/opt/acc/sbin/exadocker
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#docker build -q -t combp $1
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#docker pull bbimber/combpdocker
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sudo $DOCKER run --rm=true -v "${DATA_DIR}:/data" -v "${OUT_DIR}:/outDir" bbimber/combpdocker comb-p pipeline -c 5 --dist $DIST --step $STEP --seed $SEED -p /outDir/${OUT_PREFIX} /data/${INPUT_FILE}
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$DOCKER run --rm=true -v "${DATA_DIR}:/data" -v "${OUT_DIR}:/outDir" bbimber/combpdocker comb-p pipeline -c 5 --dist $DIST --step $STEP --seed $SEED -p /outDir/${OUT_PREFIX} /data/${INPUT_FILE}

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