Increase aligner index RAM

bbimber · bbimber · commit 9da91b9196d2 · 2025-11-24T21:01:13.000-08:00
diff --git a/primeseq/src/org/labkey/primeseq/pipeline/SequenceJobResourceAllocator.java b/primeseq/src/org/labkey/primeseq/pipeline/SequenceJobResourceAllocator.java
@@ -99,7 +99,7 @@ private int getAlignerIndexMem(PipelineJob job)
         else if (job.getClass().getName().endsWith("ReferenceLibraryPipelineJob"))
         {
             // This almost always includes bwa-mem
-            return 72;
+            return 128;
         }
 
         return 72;

Original file line number	Diff line number	Diff line change
`@@ -99,7 +99,7 @@ private int getAlignerIndexMem(PipelineJob job)`
`99`	`99`	`else if (job.getClass().getName().endsWith("ReferenceLibraryPipelineJob"))`
`100`	`100`	`{`
`101`	`101`	`// This almost always includes bwa-mem`
`102`		`- return 72;`
	`102`	`+ return 128;`
`103`	`103`	`}`
`104`	`104`
`105`	`105`	`return 72;`