Increase default memory

bbimber · bbimber · commit 90d9f0444c0a · 2025-11-21T07:47:14.000-08:00
diff --git a/primeseq/src/org/labkey/primeseq/pipeline/SequenceJobResourceAllocator.java b/primeseq/src/org/labkey/primeseq/pipeline/SequenceJobResourceAllocator.java
@@ -92,7 +92,7 @@ private int getAlignerIndexMem(PipelineJob job)
                 String aligner = params.get("alignment");
                 if (Arrays.asList("BWA-Mem", "BWA-Mem2", "STAR").contains(aligner))
                 {
-                    return 72;
+                    return 128;
                 }
             }
         }
@@ -102,7 +102,7 @@ else if (job.getClass().getName().endsWith("ReferenceLibraryPipelineJob"))
             return 72;
         }
 
-        return 36;
+        return 72;
     }
 
     @Override

Original file line number	Diff line number	Diff line change
`@@ -92,7 +92,7 @@ private int getAlignerIndexMem(PipelineJob job)`
`92`	`92`	`String aligner = params.get("alignment");`
`93`	`93`	`if (Arrays.asList("BWA-Mem", "BWA-Mem2", "STAR").contains(aligner))`
`94`	`94`	`{`
`95`		`- return 72;`
	`95`	`+ return 128;`
`96`	`96`	`}`
`97`	`97`	`}`
`98`	`98`	`}`
`@@ -102,7 +102,7 @@ else if (job.getClass().getName().endsWith("ReferenceLibraryPipelineJob"))`
`102`	`102`	`return 72;`
`103`	`103`	`}`
`104`	`104`
`105`		`- return 36;`
	`105`	`+ return 72;`
`106`	`106`	`}`
`107`	`107`
`108`	`108`	`@Override`