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Allow both light and deep WGS samples
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mGAP/src/org/labkey/mgap/pipeline/SampleSpecificGenotypeFiltrationStep.java

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@@ -112,6 +112,9 @@ else if (header.getSampleNamesInOrder().size() != 1)
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case "Whole Genome: Deep Coverage":
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setName = "WGS";
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break;
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case "Whole Genome: Light Coverage":
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setName = "WGS";
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break;
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case "Whole Exome":
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setName = "WXS";
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break;

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