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Fix error in TableSelector
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mGAP/src/org/labkey/mgap/pipeline/AnnotationStep.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -159,7 +159,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Seque
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{
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writer.println(StringUtils.join(Arrays.asList("DataSource", "SourceField", "ID", "Number", "Type", "Description"), "\t"));
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new TableSelector(QueryService.get().getUserSchema(getPipelineCtx().getJob().getUser(), targetContainer, mGAPSchema.NAME).getTable(mGAPSchema.TABLE_VARIANT_ANNOTATIONS), PageFlowUtil.set("toolName", "sourceField", "infoKey")).forEachResults(rs -> {
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new TableSelector(QueryService.get().getUserSchema(getPipelineCtx().getJob().getUser(), targetContainer, mGAPSchema.NAME).getTable(mGAPSchema.TABLE_VARIANT_ANNOTATIONS), PageFlowUtil.set("toolName", "sourceField", "infoKey", "dataSource", "dataNumber", "dataType", "description")).forEachResults(rs -> {
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if (!sourceFieldMap.containsKey(rs.getString(FieldKey.fromString("toolName"))))
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{
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sourceFieldMap.put(rs.getString(FieldKey.fromString("toolName")), new ArrayList<>());

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