Improve debugging

bbimber · bbimber · commit 59becfaa8de9 · 2025-02-01T14:01:19.000-08:00
diff --git a/mGAP/src/org/labkey/mgap/pipeline/mGapReleaseGenerator.java b/mGAP/src/org/labkey/mgap/pipeline/mGapReleaseGenerator.java
@@ -1048,7 +1048,7 @@ private void checkVcfAnnotationsAndSamples(File vcfInput, boolean skipAnnotation
 
                     if (!nonCompliant.isEmpty())
                     {
-                        throw new PipelineJobException("Names do not conform to format: " + StringUtils.join(nonCompliant, ","));
+                        throw new PipelineJobException("Names do not conform to format: " + StringUtils.join(nonCompliant, ",") + ", in file: " + vcfInput.getName());
                     }
                 }
 

Original file line number	Diff line number	Diff line change
`@@ -1048,7 +1048,7 @@ private void checkVcfAnnotationsAndSamples(File vcfInput, boolean skipAnnotation`
`1048`	`1048`
`1049`	`1049`	`if (!nonCompliant.isEmpty())`
`1050`	`1050`	`{`
`1051`		`- throw new PipelineJobException("Names do not conform to format: " + StringUtils.join(nonCompliant, ","));`
	`1051`	`+ throw new PipelineJobException("Names do not conform to format: " + StringUtils.join(nonCompliant, ",") + ", in file: " + vcfInput.getName());`
`1052`	`1052`	`}`
`1053`	`1053`	`}`
`1054`	`1054`