remove (Integer) casts

bulk search/replace

Author: labkey-matthewb

elispot_assay/src/org/labkey/elispot_assay/assay/DefaultImportMethod.java

@@ -32,6 +32,8 @@
 import java.util.List;
 import java.util.Map;
 
+import static org.labkey.api.exp.api.ExperimentService.asInteger;
+
 /**
  * Created with IntelliJ IDEA.
  * User: bimber
@@ -134,7 +136,7 @@ protected List<Map<String, Object>> calculatePositivity(List<Map<String, Object>
 
             if (TYPE.NEG.getText().equals(row.get(CATEGORY_FIELD)))
             {
-                Integer spots = (Integer)row.get(SPOTS_FIELD);
+                Integer spots = asInteger(row.get(SPOTS_FIELD));
                 List<Double> negCtls = negWellMap.get(negCtlKey);
                 if (negCtls == null)
                     negCtls = new ArrayList<Double>();
@@ -188,8 +190,8 @@ protected List<Map<String, Object>> calculatePositivity(List<Map<String, Object>
             int rowIdx = 0;
             for (Map<String, Object> row : rowSet)
             {
-                totalSpots += (Integer)row.get(SPOTS_FIELD);
-                allSpots[rowIdx] = (Integer)row.get(SPOTS_FIELD);
+                totalSpots += asInteger(row.get(SPOTS_FIELD));
+                allSpots[rowIdx] = asInteger(row.get(SPOTS_FIELD));
                 rowIdx++;
             }
             Double avgSpots = totalSpots / rowSet.size();
@@ -262,7 +264,7 @@ protected List<Map<String, Object>> calculatePositivity(List<Map<String, Object>
                     row.put(QCFLAG_FIELD, StringUtils.join(qcflags, "\n"));
 
                 //subtract background
-                Integer spots = (Integer)row.get(SPOTS_FIELD);
+                Integer spots = asInteger(row.get(SPOTS_FIELD));
                 Double adj = spots - negCtlSummary.getMean();
                 List<String> comments = new ArrayList<String>();
                 if (row.get("comment") != null)

mGAP/src/org/labkey/mgap/mGAPController.java

@@ -122,6 +122,8 @@
 import java.util.zip.ZipEntry;
 import java.util.zip.ZipOutputStream;
 
+import static org.labkey.api.exp.api.ExperimentService.asInteger;
+
 
 public class mGAPController extends SpringActionController
 {
@@ -413,7 +415,7 @@ public Object execute(ApproveUserRequestsForm form, BindException errors) throws
                     User u;
                     if (map.get("userId") != null)
                     {
-                        Integer userId = (Integer) map.get("userId");
+                        Integer userId = asInteger(map.get("userId"));
                         u = UserManager.getUser(userId);
                         existingUsersGivenAccess.add(u);
                     }
@@ -556,7 +558,7 @@ else if (!rowContainer.hasPermission(u, ReadPermission.class))
 
     private static SequenceOutputFile getOutputFile(Map<String, Object> row, ReleaseForm form, Errors errors)
     {
-        SequenceOutputFile so = SequenceOutputFile.getForId((Integer) row.get("vcfId"));
+        SequenceOutputFile so = SequenceOutputFile.getForId(asInteger(row.get("vcfId")));
         if (so == null)
         {
             errors.reject(ERROR_MSG, "Unknown VCF file ID: " + form.getReleaseId());

mcc/src/org/labkey/mcc/MccController.java

@@ -104,6 +104,8 @@
 import java.util.stream.Collectors;
 import java.util.stream.IntStream;
 
+import static org.labkey.api.exp.api.ExperimentService.asInteger;
+
 public class MccController extends SpringActionController
 {
     private static final DefaultActionResolver _actionResolver = new DefaultActionResolver(MccController.class);
@@ -356,7 +358,7 @@ public Object execute(ApproveUserRequestsForm form, BindException errors) throws
                     User u;
                     if (map.get("userId") != null)
                     {
-                        Integer userId = (Integer)map.get("userId");
+                        Integer userId = asInteger(map.get("userId"));
                         u = UserManager.getUser(userId);
                         existingUsersGivenAccess.add(u);
                     }

mcc/src/org/labkey/mcc/query/TriggerHelper.java

@@ -49,6 +49,8 @@
 import java.util.concurrent.atomic.AtomicInteger;
 import java.util.stream.Collectors;
 
+import static org.labkey.api.exp.api.ExperimentService.asInteger;
+
 /**
  * Created by bimber
  */
@@ -135,7 +137,7 @@ public void ensureReviewRecordsCreated(String objectId, String status, @Nullable
                 }
 
                 Map<String, Object> row = records.get(0);
-                if (score != (Integer)row.get("preliminaryScore"))
+                if (score != asInteger(row.get("preliminaryScore")))
                 {
                     row.put("preliminaryScore", score);
                     row.put("modified", new Date());