Reformulate as TreeOfLife-toolbox

[egrace479]

Specifically presented as taking the output of distributed-downloader and then does all these things to create the TreeOfLife dataset.

• Rename repo: TreeOfLife-toolbox
• Rename under src: TOL-toolbox
• Reorganize under TOL-toolbox to have submodules based on function (e.g., filtering, data-transfer) with sub-submodules (e.g., research-filtering)
• Add from TreeOfLife-dev as submodules in src/TOL-toolbox:
  • webdataset creation
  • metadata transfer
  • lookup table creator
• Add from TreeOfLife-dev at root-level scripts/ directory all lookup table exclude creators (many of these are here):
  • PDQ hash process
  • Image type separator (museum, camera trap, and citizen science categories)
  • Museum Specimen processing: label vs specimen filter
  • camera trap processing: megadetector & reducer
  • citizen science image processing
  • face detection
• Add from TreeOfLife-dev at root-level notebooks/ directory all lookup table exclude creators:
  • clustering and other EDA determinations
• Add root-level data/ folder with embeddings for museum support sets (relates to Add processing tools for exclusion sets (as methods) #22).

This will be done following the merge of PRs #1 through #15.