From 0bee65c35ae06c28134a4ac51772e9f64804cb34 Mon Sep 17 00:00:00 2001 From: Katrin Leinweber <9948149+katrinleinweber@users.noreply.github.com> Date: Thu, 13 Dec 2018 22:07:28 +0100 Subject: [PATCH] Hyperlink DOIs to preferred resolver --- ETS.csv | 2 +- docs/ETS.csv | 2 +- docs/ets.owl | 2 +- docs/index.html | 2 +- docs/v0.4/index.html | 2 +- docs/v0.5/index.html | 2 +- docs/v0.6/TraitDataStandard.csv | 6 +++--- docs/v0.6/TraitDataStandard.txt | 6 +++--- docs/v0.6/TraitDataStandard.xml | 2 +- docs/v0.6/index.html | 2 +- docs/v0.7/TraitDataStandard.csv | 6 +++--- docs/v0.7/TraitDataStandard.txt | 6 +++--- docs/v0.7/TraitDataStandard.xml | 2 +- docs/v0.7/index.html | 2 +- docs/v0.8/TraitDataStandard.csv | 6 +++--- docs/v0.8/index.html | 2 +- docs/v0.9/ETS.csv | 2 +- docs/v0.9/ets.owl | 4 ++-- docs/v0.9/index.html | 2 +- ets.owl | 2 +- gfbio/site/ETS.csv | 2 +- gfbio/site/ets.owl | 2 +- gfbio/site/index.html | 2 +- v0.4/index.html | 2 +- v0.5/index.html | 2 +- v0.6/TraitDataStandard.csv | 6 +++--- v0.6/TraitDataStandard.txt | 6 +++--- v0.6/TraitDataStandard.xml | 2 +- v0.6/index.html | 2 +- v0.7/TraitDataStandard.csv | 6 +++--- v0.7/TraitDataStandard.txt | 6 +++--- v0.7/TraitDataStandard.xml | 2 +- v0.7/index.html | 2 +- v0.8/TraitDataStandard.csv | 6 +++--- v0.8/index.html | 2 +- v0.9/ETS.csv | 2 +- v0.9/ets.owl | 4 ++-- v0.9/index.html | 2 +- 38 files changed, 60 insertions(+), 60 deletions(-) diff --git a/ETS.csv b/ETS.csv index 778747a..f77bd59 100644 --- a/ETS.csv +++ b/ETS.csv @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://terminologies.gfbio.org/terms/ETS/age,,,,,v0.8,201 Occurrence,morphotype,character,http://terminologies.gfbio.org/terms/ETS/morphotype,,,,,v0.8,2017-07-07,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://terminologies.gfbio.org/terms/ETS/eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.8,2017-07-07,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",Examples: a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.8,2017-07-07,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurrence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.8,2017-07-07,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.8,2017-07-07,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.8,2017-07-07,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" diff --git a/docs/ETS.csv b/docs/ETS.csv index 778747a..f77bd59 100644 --- a/docs/ETS.csv +++ b/docs/ETS.csv @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://terminologies.gfbio.org/terms/ETS/age,,,,,v0.8,201 Occurrence,morphotype,character,http://terminologies.gfbio.org/terms/ETS/morphotype,,,,,v0.8,2017-07-07,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://terminologies.gfbio.org/terms/ETS/eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.8,2017-07-07,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",Examples: a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.8,2017-07-07,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurrence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.8,2017-07-07,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.8,2017-07-07,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.8,2017-07-07,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" diff --git a/docs/ets.owl b/docs/ets.owl index cadfd51..96686b3 100644 --- a/docs/ets.owl +++ b/docs/ets.owl @@ -547,7 +547,7 @@ samplingProtocol The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol 2017-07-07 diff --git a/docs/index.html b/docs/index.html index bb11e91..1c1ef05 100644 --- a/docs/index.html +++ b/docs/index.html @@ -4138,7 +4138,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/docs/v0.4/index.html b/docs/v0.4/index.html index 8a9458e..f99b4a1 100644 --- a/docs/v0.4/index.html +++ b/docs/v0.4/index.html @@ -2377,7 +2377,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol diff --git a/docs/v0.5/index.html b/docs/v0.5/index.html index 03b85da..b78e75e 100644 --- a/docs/v0.5/index.html +++ b/docs/v0.5/index.html @@ -2255,7 +2255,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol diff --git a/docs/v0.6/TraitDataStandard.csv b/docs/v0.6/TraitDataStandard.csv index cda8ea1..3f8bca0 100644 --- a/docs/v0.6/TraitDataStandard.csv +++ b/docs/v0.6/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.3,07/07/2017,,Unique identifier of the trait following a public or user-provided thesaurus of traits. , Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,07/07/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,07/07/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,07/07/2017,01/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,07/07/2017,01/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,07/07/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,07/07/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,07/07/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -36,7 +36,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,07 Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,07/07/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,07/07/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",could be a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,,,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,,,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,,,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,,,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -48,7 +48,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,07/07/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,,,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,,,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,,,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,,,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,,,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/docs/v0.6/TraitDataStandard.txt b/docs/v0.6/TraitDataStandard.txt index 63c4305..ce6d881 100644 --- a/docs/v0.6/TraitDataStandard.txt +++ b/docs/v0.6/TraitDataStandard.txt @@ -7,7 +7,7 @@ Traitdata traitName character http://fdschneider.de/bexis_traits/traitdatastand Traitdata traitID factor http://fdschneider.de/bexis_traits/traitdatastandard.html#traitid v0.3 07.07.2017 Unique identifier of the trait following a public or user-provided thesaurus of traits. Traitdata traitValue character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitvalue http://rs.tdwg.org/dwc/terms/measurementValue v0.3 07.07.2017 Measured raw value or factor level for this species trait as measured and provided by the author. "Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata traitUnit character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitunit http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 07.07.2017 "Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. " "For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata scientificNameStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.3 07.07.2017 Full scientific name (with authorship and date information if known). It should be an accepted taxon name according to a published taxonomy (provided in taxonID). "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata scientificNameStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.3 07.07.2017 Full scientific name (with authorship and date information if known). It should be an accepted taxon name according to a published taxonomy (provided in taxonID). "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata traitNameStd factor http://fdschneider.de/bexis_traits/traitdatastandard.html#traitnamestd http://rs.tdwg.org/dwc/terms/measurementType v0.3 07.07.2017 Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. "Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata traitValueStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitvaluestd http://rs.tdwg.org/dwc/terms/measurementValue v0.3 07.07.2017 Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. "Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata traitUnitStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitunitstd http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 07.07.2017 The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. "Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -35,7 +35,7 @@ Occurence age numeric v0.3 07.07.2017 The age of the specimen in years. "Ex Occurence morphotype character v0.3 07.07.2017 The morphotype of the observed specimen. "Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurence eventID character http://rs.tdwg.org/dwc/terms/eventID v0.3 07.07.2017 "The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc.." could be a combination of date and sampling region Occurence preparations character http://rs.tdwg.org/dwc/terms/preparations v0.3 07.07.2017 "For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. " "Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol v0.3 07.07.2017 "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol v0.3 07.07.2017 "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurence year integer http://rs.tdwg.org/dwc/terms/year v0.3 07.07.2017 "The four-digit year, at which the specimens were extracted or sampled. " "Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurence month integer http://rs.tdwg.org/dwc/terms/month v0.3 07.07.2017 "The ordinal month, in which the specimens were extracted or sampled. " "Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurence day integer http://rs.tdwg.org/dwc/terms/day v0.3 07.07.2017 The integer day of the month on which the specimens were extracted or sampled. "Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -47,7 +47,7 @@ Occurence decimalLatitude numeric http://rs.tdwg.org/dwc/terms/decimalLatitude Occurence elevation numeric http://rs.tdwg.org/dwc/terms/verbatimElevation v0.3 07.07.2017 The geographic elevation in meters above sea level. "May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurence geodeticDatum factor http://rs.tdwg.org/dwc/terms/geodeticDatum v0.3 07.07.2017 "The geodeticDatum defines the ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended system is ""WGS84"". Use the EPSG code to provide an SRS. Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866""*" Occurence verbatimLocality character http://rs.tdwg.org/dwc/terms/verbatimLocality v0.3 07.07.2017 "The specific description of the place. Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. " -Occurence country character http://rs.tdwg.org/dwc/terms/country v0.3 07.07.2017 Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " +Occurence country character http://rs.tdwg.org/dwc/terms/country v0.3 07.07.2017 Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " Occurence countryCode factor http://rs.tdwg.org/dwc/terms/countryCode v0.3 07.07.2017 The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes. "Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " Occurence occurenceRemarks character http://rs.tdwg.org/dwc/terms/occurrenceRemarks v0.3 07.07.2017 Comments or notes about the Occurrence. "Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata rightsHolder character http://purl.org/dc/terms/rightsHolder v0.3 07.07.2017 "A person or organization owning or managing rights over the resource, i.e. this dataset." "A list of author names (separated by |) or name of a consortium, or institution" diff --git a/docs/v0.6/TraitDataStandard.xml b/docs/v0.6/TraitDataStandard.xml index 3b14605..6a326e0 100644 --- a/docs/v0.6/TraitDataStandard.xml +++ b/docs/v0.6/TraitDataStandard.xml @@ -493,7 +493,7 @@ The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol Occurrence diff --git a/docs/v0.6/index.html b/docs/v0.6/index.html index 532140c..fbd51aa 100644 --- a/docs/v0.6/index.html +++ b/docs/v0.6/index.html @@ -3862,7 +3862,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/docs/v0.7/TraitDataStandard.csv b/docs/v0.7/TraitDataStandard.csv index a8e45a0..58dc852 100644 --- a/docs/v0.7/TraitDataStandard.csv +++ b/docs/v0.7/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.3,7/7/2017,,Unique identifier of the trait following a public or user-provided thesaurus of traits. , Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,7/7/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,7/ Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,7/7/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,7/7/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",could be a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,,,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,,,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,,,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,,,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,7/7/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,,,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,,,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,,,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,,,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,,,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/docs/v0.7/TraitDataStandard.txt b/docs/v0.7/TraitDataStandard.txt index dd21721..6825610 100644 --- a/docs/v0.7/TraitDataStandard.txt +++ b/docs/v0.7/TraitDataStandard.txt @@ -4,7 +4,7 @@ Traitdata traitName character http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata traitID factor http://ecologicaltraitdata.github.io/ETS/#traitid v0.3 7/7/2017 Unique identifier of the trait following a public or user-provided thesaurus of traits. Traitdata traitValue character http://ecologicaltraitdata.github.io/ETS/#traitvalue http://rs.tdwg.org/dwc/terms/measurementValue v0.3 7/7/2017 Measured raw value or factor level for this species trait as measured and provided by the author. "Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata traitUnit character http://ecologicaltraitdata.github.io/ETS/#traitunit http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 7/7/2017 "Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. " "For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata scientificNameStd character http://ecologicaltraitdata.github.io/ETS/#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.5 7/7/2017 1/11/2017 "The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon." "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata scientificNameStd character http://ecologicaltraitdata.github.io/ETS/#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.5 7/7/2017 1/11/2017 "The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon." "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata traitNameStd factor http://ecologicaltraitdata.github.io/ETS/#traitnamestd http://rs.tdwg.org/dwc/terms/measurementType v0.3 7/7/2017 Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. "Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata traitValueStd character http://ecologicaltraitdata.github.io/ETS/#traitvaluestd http://rs.tdwg.org/dwc/terms/measurementValue v0.3 7/7/2017 Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. "Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata traitUnitStd character http://ecologicaltraitdata.github.io/ETS/#traitunitstd http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 7/7/2017 The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. "Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence age numeric http://ecologicaltraitdata.github.io/ETS/#age v0.3 7/ Occurrence morphotype character http://ecologicaltraitdata.github.io/ETS/#morphotype v0.3 7/7/2017 The morphotype of the observed specimen. "Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence eventID character http://ecologicaltraitdata.github.io/ETS/#eventID http://rs.tdwg.org/dwc/terms/eventID v0.3 7/7/2017 "The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc.." could be a combination of date and sampling region Occurrence preparations character http://rs.tdwg.org/dwc/terms/preparations "For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. " "Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence year integer http://rs.tdwg.org/dwc/terms/year "The four-digit year, at which the specimens were extracted or sampled. " "Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence month integer http://rs.tdwg.org/dwc/terms/month "The ordinal month, in which the specimens were extracted or sampled. " "Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence day integer http://rs.tdwg.org/dwc/terms/day The integer day of the month on which the specimens were extracted or sampled. "Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence decimalLatitude numeric http://rs.tdwg.org/dwc/terms/decimalLatitude Occurrence elevation numeric http://ecologicaltraitdata.github.io/ETS/#elevation http://rs.tdwg.org/dwc/terms/verbatimElevation v0.3 7/7/2017 The geographic elevation in meters above sea level. "May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence geodeticDatum factor http://rs.tdwg.org/dwc/terms/geodeticDatum "The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown""." "Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence verbatimLocality character http://rs.tdwg.org/dwc/terms/verbatimLocality The specific description of the place. "Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence country character http://rs.tdwg.org/dwc/terms/country The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence country character http://rs.tdwg.org/dwc/terms/country The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence countryCode factor http://rs.tdwg.org/dwc/terms/countryCode The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes. "Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence occurenceRemarks character http://rs.tdwg.org/dwc/terms/occurrenceRemarks Comments or notes about the Occurrence. "Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata rightsHolder character http://purl.org/dc/terms/rightsHolder "A person or organization owning or managing rights over the resource, i.e. this dataset." "Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/docs/v0.7/TraitDataStandard.xml b/docs/v0.7/TraitDataStandard.xml index 25c9885..dfd1b24 100644 --- a/docs/v0.7/TraitDataStandard.xml +++ b/docs/v0.7/TraitDataStandard.xml @@ -629,7 +629,7 @@ The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol Occurrence diff --git a/docs/v0.7/index.html b/docs/v0.7/index.html index 4282a3f..8b8bd67 100644 --- a/docs/v0.7/index.html +++ b/docs/v0.7/index.html @@ -4120,7 +4120,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/docs/v0.8/TraitDataStandard.csv b/docs/v0.8/TraitDataStandard.csv index 297f431..c6b4191 100644 --- a/docs/v0.8/TraitDataStandard.csv +++ b/docs/v0.8/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.4,7/7/2017,5/29/2018,"Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits. ",Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass; Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,7/7/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,7/ Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,7/7/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,7/7/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",E.g. a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.1,7/7/2017,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.1,7/7/2017,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.1,7/7/2017,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.1,7/7/2017,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.1,7/7/2017,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.1,7/7/2017,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,7/7/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,v0.1,7/7/2017,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,v0.1,7/7/2017,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,v0.1,7/7/2017,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,v0.1,7/7/2017,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,v0.1,7/7/2017,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,v0.1,7/7/2017,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,v0.1,7/7/2017,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/docs/v0.8/index.html b/docs/v0.8/index.html index 0961859..313e440 100644 --- a/docs/v0.8/index.html +++ b/docs/v0.8/index.html @@ -3996,7 +3996,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/docs/v0.9/ETS.csv b/docs/v0.9/ETS.csv index 9771160..1828430 100644 --- a/docs/v0.9/ETS.csv +++ b/docs/v0.9/ETS.csv @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://terminologies.gfbio.org/terms/ETS/age,,,,,v0.8,201 Occurrence,morphotype,character,http://terminologies.gfbio.org/terms/ETS/morphotype,,,,,v0.8,2017-07-07,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://terminologies.gfbio.org/terms/ETS/eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.8,2017-07-07,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",Examples: a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.8,2017-07-07,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurrence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.8,2017-07-07,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.8,2017-07-07,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.8,2017-07-07,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" diff --git a/docs/v0.9/ets.owl b/docs/v0.9/ets.owl index 39b6940..f11c1c2 100644 --- a/docs/v0.9/ets.owl +++ b/docs/v0.9/ets.owl @@ -524,7 +524,7 @@ samplingProtocol The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol 2017-07-07 @@ -932,4 +932,4 @@ recommended - \ No newline at end of file + diff --git a/docs/v0.9/index.html b/docs/v0.9/index.html index d3f5c70..6786301 100644 --- a/docs/v0.9/index.html +++ b/docs/v0.9/index.html @@ -4132,7 +4132,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/ets.owl b/ets.owl index cadfd51..96686b3 100644 --- a/ets.owl +++ b/ets.owl @@ -547,7 +547,7 @@ samplingProtocol The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol 2017-07-07 diff --git a/gfbio/site/ETS.csv b/gfbio/site/ETS.csv index 778747a..f77bd59 100644 --- a/gfbio/site/ETS.csv +++ b/gfbio/site/ETS.csv @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://terminologies.gfbio.org/terms/ETS/age,,,,,v0.8,201 Occurrence,morphotype,character,http://terminologies.gfbio.org/terms/ETS/morphotype,,,,,v0.8,2017-07-07,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://terminologies.gfbio.org/terms/ETS/eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.8,2017-07-07,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",Examples: a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.8,2017-07-07,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurrence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.8,2017-07-07,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.8,2017-07-07,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.8,2017-07-07,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" diff --git a/gfbio/site/ets.owl b/gfbio/site/ets.owl index cadfd51..96686b3 100644 --- a/gfbio/site/ets.owl +++ b/gfbio/site/ets.owl @@ -547,7 +547,7 @@ samplingProtocol The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol 2017-07-07 diff --git a/gfbio/site/index.html b/gfbio/site/index.html index 86a6484..91ff9da 100644 --- a/gfbio/site/index.html +++ b/gfbio/site/index.html @@ -4123,7 +4123,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/v0.4/index.html b/v0.4/index.html index 8a9458e..f99b4a1 100644 --- a/v0.4/index.html +++ b/v0.4/index.html @@ -2377,7 +2377,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol diff --git a/v0.5/index.html b/v0.5/index.html index 03b85da..b78e75e 100644 --- a/v0.5/index.html +++ b/v0.5/index.html @@ -2255,7 +2255,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol diff --git a/v0.6/TraitDataStandard.csv b/v0.6/TraitDataStandard.csv index cda8ea1..3f8bca0 100644 --- a/v0.6/TraitDataStandard.csv +++ b/v0.6/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.3,07/07/2017,,Unique identifier of the trait following a public or user-provided thesaurus of traits. , Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,07/07/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,07/07/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,07/07/2017,01/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,07/07/2017,01/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,07/07/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,07/07/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,07/07/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -36,7 +36,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,07 Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,07/07/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,07/07/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",could be a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,,,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,,,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,,,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,,,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -48,7 +48,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,07/07/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,,,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,,,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,,,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,,,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,,,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/v0.6/TraitDataStandard.txt b/v0.6/TraitDataStandard.txt index 63c4305..ce6d881 100644 --- a/v0.6/TraitDataStandard.txt +++ b/v0.6/TraitDataStandard.txt @@ -7,7 +7,7 @@ Traitdata traitName character http://fdschneider.de/bexis_traits/traitdatastand Traitdata traitID factor http://fdschneider.de/bexis_traits/traitdatastandard.html#traitid v0.3 07.07.2017 Unique identifier of the trait following a public or user-provided thesaurus of traits. Traitdata traitValue character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitvalue http://rs.tdwg.org/dwc/terms/measurementValue v0.3 07.07.2017 Measured raw value or factor level for this species trait as measured and provided by the author. "Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata traitUnit character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitunit http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 07.07.2017 "Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. " "For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata scientificNameStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.3 07.07.2017 Full scientific name (with authorship and date information if known). It should be an accepted taxon name according to a published taxonomy (provided in taxonID). "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata scientificNameStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.3 07.07.2017 Full scientific name (with authorship and date information if known). It should be an accepted taxon name according to a published taxonomy (provided in taxonID). "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata traitNameStd factor http://fdschneider.de/bexis_traits/traitdatastandard.html#traitnamestd http://rs.tdwg.org/dwc/terms/measurementType v0.3 07.07.2017 Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. "Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata traitValueStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitvaluestd http://rs.tdwg.org/dwc/terms/measurementValue v0.3 07.07.2017 Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. "Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata traitUnitStd character http://fdschneider.de/bexis_traits/traitdatastandard.html#traitunitstd http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 07.07.2017 The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. "Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -35,7 +35,7 @@ Occurence age numeric v0.3 07.07.2017 The age of the specimen in years. "Ex Occurence morphotype character v0.3 07.07.2017 The morphotype of the observed specimen. "Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurence eventID character http://rs.tdwg.org/dwc/terms/eventID v0.3 07.07.2017 "The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc.." could be a combination of date and sampling region Occurence preparations character http://rs.tdwg.org/dwc/terms/preparations v0.3 07.07.2017 "For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. " "Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol v0.3 07.07.2017 "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol v0.3 07.07.2017 "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurence year integer http://rs.tdwg.org/dwc/terms/year v0.3 07.07.2017 "The four-digit year, at which the specimens were extracted or sampled. " "Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurence month integer http://rs.tdwg.org/dwc/terms/month v0.3 07.07.2017 "The ordinal month, in which the specimens were extracted or sampled. " "Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurence day integer http://rs.tdwg.org/dwc/terms/day v0.3 07.07.2017 The integer day of the month on which the specimens were extracted or sampled. "Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -47,7 +47,7 @@ Occurence decimalLatitude numeric http://rs.tdwg.org/dwc/terms/decimalLatitude Occurence elevation numeric http://rs.tdwg.org/dwc/terms/verbatimElevation v0.3 07.07.2017 The geographic elevation in meters above sea level. "May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurence geodeticDatum factor http://rs.tdwg.org/dwc/terms/geodeticDatum v0.3 07.07.2017 "The geodeticDatum defines the ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended system is ""WGS84"". Use the EPSG code to provide an SRS. Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866""*" Occurence verbatimLocality character http://rs.tdwg.org/dwc/terms/verbatimLocality v0.3 07.07.2017 "The specific description of the place. Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. " -Occurence country character http://rs.tdwg.org/dwc/terms/country v0.3 07.07.2017 Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " +Occurence country character http://rs.tdwg.org/dwc/terms/country v0.3 07.07.2017 Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " Occurence countryCode factor http://rs.tdwg.org/dwc/terms/countryCode v0.3 07.07.2017 The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes. "Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode; This should be added if a more precise location is unavailable, to enable data to be used by GBif. " Occurence occurenceRemarks character http://rs.tdwg.org/dwc/terms/occurrenceRemarks v0.3 07.07.2017 Comments or notes about the Occurrence. "Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata rightsHolder character http://purl.org/dc/terms/rightsHolder v0.3 07.07.2017 "A person or organization owning or managing rights over the resource, i.e. this dataset." "A list of author names (separated by |) or name of a consortium, or institution" diff --git a/v0.6/TraitDataStandard.xml b/v0.6/TraitDataStandard.xml index 3b14605..6a326e0 100644 --- a/v0.6/TraitDataStandard.xml +++ b/v0.6/TraitDataStandard.xml @@ -493,7 +493,7 @@ The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol Occurrence diff --git a/v0.6/index.html b/v0.6/index.html index 532140c..fbd51aa 100644 --- a/v0.6/index.html +++ b/v0.6/index.html @@ -3862,7 +3862,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/v0.7/TraitDataStandard.csv b/v0.7/TraitDataStandard.csv index a8e45a0..58dc852 100644 --- a/v0.7/TraitDataStandard.csv +++ b/v0.7/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.3,7/7/2017,,Unique identifier of the trait following a public or user-provided thesaurus of traits. , Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,7/7/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,7/ Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,7/7/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,7/7/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",could be a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,,,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,,,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,,,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,,,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,,,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,7/7/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,,,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,,,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,,,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,,,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,,,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,,,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/v0.7/TraitDataStandard.txt b/v0.7/TraitDataStandard.txt index dd21721..6825610 100644 --- a/v0.7/TraitDataStandard.txt +++ b/v0.7/TraitDataStandard.txt @@ -4,7 +4,7 @@ Traitdata traitName character http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata traitID factor http://ecologicaltraitdata.github.io/ETS/#traitid v0.3 7/7/2017 Unique identifier of the trait following a public or user-provided thesaurus of traits. Traitdata traitValue character http://ecologicaltraitdata.github.io/ETS/#traitvalue http://rs.tdwg.org/dwc/terms/measurementValue v0.3 7/7/2017 Measured raw value or factor level for this species trait as measured and provided by the author. "Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata traitUnit character http://ecologicaltraitdata.github.io/ETS/#traitunit http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 7/7/2017 "Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. " "For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata scientificNameStd character http://ecologicaltraitdata.github.io/ETS/#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.5 7/7/2017 1/11/2017 "The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon." "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata scientificNameStd character http://ecologicaltraitdata.github.io/ETS/#scientificnamestd http://rs.tdwg.org/dwc/terms/scientificName v0.5 7/7/2017 1/11/2017 "The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon." "Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata traitNameStd factor http://ecologicaltraitdata.github.io/ETS/#traitnamestd http://rs.tdwg.org/dwc/terms/measurementType v0.3 7/7/2017 Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. "Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata traitValueStd character http://ecologicaltraitdata.github.io/ETS/#traitvaluestd http://rs.tdwg.org/dwc/terms/measurementValue v0.3 7/7/2017 Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. "Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata traitUnitStd character http://ecologicaltraitdata.github.io/ETS/#traitunitstd http://rs.tdwg.org/dwc/terms/measurementUnit v0.3 7/7/2017 The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. "Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence age numeric http://ecologicaltraitdata.github.io/ETS/#age v0.3 7/ Occurrence morphotype character http://ecologicaltraitdata.github.io/ETS/#morphotype v0.3 7/7/2017 The morphotype of the observed specimen. "Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence eventID character http://ecologicaltraitdata.github.io/ETS/#eventID http://rs.tdwg.org/dwc/terms/eventID v0.3 7/7/2017 "The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc.." could be a combination of date and sampling region Occurrence preparations character http://rs.tdwg.org/dwc/terms/preparations "For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. " "Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence samplingProtocol character http://rs.tdwg.org/dwc/terms/samplingProtocol "The name of, reference to, or description of the method or protocol used for obtaining the specimen. " "Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence year integer http://rs.tdwg.org/dwc/terms/year "The four-digit year, at which the specimens were extracted or sampled. " "Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence month integer http://rs.tdwg.org/dwc/terms/month "The ordinal month, in which the specimens were extracted or sampled. " "Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence day integer http://rs.tdwg.org/dwc/terms/day The integer day of the month on which the specimens were extracted or sampled. "Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence decimalLatitude numeric http://rs.tdwg.org/dwc/terms/decimalLatitude Occurrence elevation numeric http://ecologicaltraitdata.github.io/ETS/#elevation http://rs.tdwg.org/dwc/terms/verbatimElevation v0.3 7/7/2017 The geographic elevation in meters above sea level. "May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence geodeticDatum factor http://rs.tdwg.org/dwc/terms/geodeticDatum "The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown""." "Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence verbatimLocality character http://rs.tdwg.org/dwc/terms/verbatimLocality The specific description of the place. "Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence country character http://rs.tdwg.org/dwc/terms/country The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence country character http://rs.tdwg.org/dwc/terms/country The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names. "Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence countryCode factor http://rs.tdwg.org/dwc/terms/countryCode The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes. "Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence occurenceRemarks character http://rs.tdwg.org/dwc/terms/occurrenceRemarks Comments or notes about the Occurrence. "Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata rightsHolder character http://purl.org/dc/terms/rightsHolder "A person or organization owning or managing rights over the resource, i.e. this dataset." "Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/v0.7/TraitDataStandard.xml b/v0.7/TraitDataStandard.xml index 25c9885..dfd1b24 100644 --- a/v0.7/TraitDataStandard.xml +++ b/v0.7/TraitDataStandard.xml @@ -629,7 +629,7 @@ The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol Occurrence diff --git a/v0.7/index.html b/v0.7/index.html index 4282a3f..8b8bd67 100644 --- a/v0.7/index.html +++ b/v0.7/index.html @@ -4120,7 +4120,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/v0.8/TraitDataStandard.csv b/v0.8/TraitDataStandard.csv index 297f431..c6b4191 100644 --- a/v0.8/TraitDataStandard.csv +++ b/v0.8/TraitDataStandard.csv @@ -4,7 +4,7 @@ Traitdata,traitName,character,http://ecologicaltraitdata.github.io/ETS/#traitnam Traitdata,traitID,factor,http://ecologicaltraitdata.github.io/ETS/#traitid,,,,,v0.4,7/7/2017,5/29/2018,"Unique identifier of the trait according to a public ontology, or a user-provided thesaurus of traits. ",Examples: TO:0000181; TOP103; http://top-thesaurus.org/annotationInfo?viz=1&&trait=Seed_mass; Traitdata,traitValue,character,http://ecologicaltraitdata.github.io/ETS/#traitvalue,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Measured raw value or factor level for this species trait as measured and provided by the author. ,"Must respect the unit given in 'measurementUnit_user' for numerical traits. For categorical traits, the factor levels should be harmonized across the dataset and explained in the metadata. " Traitdata,traitUnit,character,http://ecologicaltraitdata.github.io/ETS/#traitunit,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,"Reports the unit that the author's raw data were measured in, if applicable (only for numeric values). For unitless numerical values, use 'unitless' in this field. For factorial values, leave empty or provide NA. ","For numerical values report unit in format for lengths ""mm"", for volumes ""mm3"" / ""mm^3"", areas ""mm2"" / ""mm^2"", for movement ""m/s"", or for volume to surface ratios: ""mm3/mm2""" -Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gyrfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" +Traitdata,scientificNameStd,character,http://ecologicaltraitdata.github.io/ETS/#scientificnamestd,http://rs.tdwg.org/dwc/terms/scientificName,,,,v0.5,7/7/2017,1/11/2017,"The full name, with authorship and date information if known. This should resolve to the currently valid (zoological) or accepted (botanical) taxon.","Provide reference taxonomy in metadata of the dataset. Examples: ""Coleoptera"" (order), ""Vespertilionidae"" (family), ""Manis"" (genus), ""Ctenomys sociabilis"" (genus + specificEpithet), ""Ambystoma tigrinum diaboli"" (genus + specificEpithet + infraspecificEpithet), ""Roptrocerus typographi (Gy�rfi, 1952)"" (genus + specificEpithet + scientificNameAuthorship), ""Quercus agrifolia var. oxyadenia (Torr.) J.T. Howell"" (genus + specificEpithet + taxonRank + infraspecificEpithet + scientificNameAuthorship). For discussion see http://terms.tdwg.org/wiki/dwc:scientificName" Traitdata,traitNameStd,factor,http://ecologicaltraitdata.github.io/ETS/#traitnamestd,http://rs.tdwg.org/dwc/terms/measurementType,,,,v0.3,7/7/2017,,Descriptive Name of the trait reported. This should follow the controlled vocabulary of a thesaurus of traits available online or published along with the dataset. ,"Accompanying this, the traitID should provide an unambiguous link to the trait definition in the thesaurus or supplementary dataset. " Traitdata,traitValueStd,character,http://ecologicaltraitdata.github.io/ETS/#traitvaluestd,http://rs.tdwg.org/dwc/terms/measurementValue,,,,v0.3,7/7/2017,,Standardised measured value or factor level for this species trait. Numerical values must use the correct unit. Factor levels must be compliant with the thesaurus of traits. ,"Using ""."" as a decimal separator! The standardized data values or factor levels must correspond to the expected units and factor levels of the trait thesaurus, e.g. ""32.423"", ""female"", ""apter"", ""3""" Traitdata,traitUnitStd,character,http://ecologicaltraitdata.github.io/ETS/#traitunitstd,http://rs.tdwg.org/dwc/terms/measurementUnit,,,,v0.3,7/7/2017,,The units associated with the measurementValue. The expected standard unit for this trait as defined in the traitlist/ thesaurus. ,"Recommended best practice is to use the International System of Units (SI). Examples: ""mm"", ""C"", ""km"", ""ha"". For discussion see http://terms.tdwg.org/wiki/dwc:measurementUnit" @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://ecologicaltraitdata.github.io/ETS/#age,,,,,v0.3,7/ Occurrence,morphotype,character,http://ecologicaltraitdata.github.io/ETS/#morphotype,,,,,v0.3,7/7/2017,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://ecologicaltraitdata.github.io/ETS/#eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.3,7/7/2017,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",E.g. a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.1,7/7/2017,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.1,7/7/2017,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.1,7/7/2017,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.1,7/7/2017,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.1,7/7/2017,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.1,7/7/2017,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" @@ -52,7 +52,7 @@ Occurrence,decimalLatitude,numeric,http://rs.tdwg.org/dwc/terms/decimalLatitude, Occurrence,elevation,numeric,http://ecologicaltraitdata.github.io/ETS/#elevation,http://rs.tdwg.org/dwc/terms/verbatimElevation,,,,v0.3,7/7/2017,,The geographic elevation in meters above sea level.,"May map to verbatimElevation (http://rs.tdwg.org/dwc/terms/verbatimElevation) or minimumElevationInMeters (http://rs.tdwg.org/dwc/terms/minimumElevationInMeters) and maximumElevationInMeters (http://rs.tdwg.org/dwc/terms/maximumElevationInMeters); Example: ""200"". For discussion see http://terms.tdwg.org/wiki/dwc:maximumElevationInMeters" Occurrence,geodeticDatum,factor,http://rs.tdwg.org/dwc/terms/geodeticDatum,,,,,v0.1,7/7/2017,,"The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based. Recommended best practice is use the EPSG code as a controlled vocabulary to provide an SRS, if known. Otherwise use a controlled vocabulary for the name or code of the geodetic datum, if known. Otherwise use a controlled vocabulary for the name or code of the ellipsoid, if known. If none of these is known, use the value ""unknown"".","Examples: ""EPSG:4326"", ""WGS84"", ""NAD27"", ""Campo Inchauspe"", ""European 1950"", ""Clarke 1866"". For discussion see http://terms.tdwg.org/wiki/dwc:geodeticDatum" Occurrence,verbatimLocality,character,http://rs.tdwg.org/dwc/terms/verbatimLocality,,,,,v0.1,7/7/2017,,The specific description of the place. ,"Less specific geographic information can be provided in other geographic terms of darwin core (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or standardize the description. Example: ""25 km NNE Bariloche por R. Nac. 237"". For discussion see http://terms.tdwg.org/wiki/dwc:verbatimLocality" -Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,v0.1,7/7/2017,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espaa"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" +Occurrence,country,character,http://rs.tdwg.org/dwc/terms/country,,,,,v0.1,7/7/2017,,The name of the country or major administrative unit in which the Location occurs. Recommended best practice is to use a controlled vocabulary such as the Getty Thesaurus of Geographic Names.,"Examples: ""Germany"", ""Denmark"", ""Colombia"", ""Espa�a"". For discussion see http://terms.tdwg.org/wiki/dwc:country;" Occurrence,countryCode,factor,http://rs.tdwg.org/dwc/terms/countryCode,,,,,v0.1,7/7/2017,,The standard code for the country in which the Location occurs. Recommended best practice is to use ISO 3166-1-alpha-2 country codes.,"Examples:""DE"" for Germany, ""AR"" for Argentina, ""SV"" for El Salvador. For discussion see http://terms.tdwg.org/wiki/dwc:countryCode" Occurrence,occurenceRemarks,character,http://rs.tdwg.org/dwc/terms/occurrenceRemarks,,,,,v0.1,7/7/2017,,Comments or notes about the Occurrence.,"Example: ""found dead on road"". For discussion see http://terms.tdwg.org/wiki/dwc:occurrenceRemarks" Metadata,rightsHolder,character,http://purl.org/dc/terms/rightsHolder,,,,,v0.1,7/7/2017,,"A person or organization owning or managing rights over the resource, i.e. this dataset.","Example: ""The Regents of the University of California."". For discussion see http://terms.tdwg.org/wiki/dwc:rightsHolder" diff --git a/v0.8/index.html b/v0.8/index.html index 0961859..313e440 100644 --- a/v0.8/index.html +++ b/v0.8/index.html @@ -3996,7 +3996,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType diff --git a/v0.9/ETS.csv b/v0.9/ETS.csv index 9771160..1828430 100644 --- a/v0.9/ETS.csv +++ b/v0.9/ETS.csv @@ -40,7 +40,7 @@ Occurrence,age,numeric,http://terminologies.gfbio.org/terms/ETS/age,,,,,v0.8,201 Occurrence,morphotype,character,http://terminologies.gfbio.org/terms/ETS/morphotype,,,,,v0.8,2017-07-07,,The morphotype of the observed specimen.,"Examples: ""worker"", ""drone"", ""queen"". Since morphotypes can differ between organism groups, provide definition of morphotypes in the metadata of the dataset. " Occurrence,eventID,character,http://terminologies.gfbio.org/terms/ETS/eventID,http://rs.tdwg.org/dwc/terms/eventID,,,,v0.8,2017-07-07,,"The sampling event or campaign. A globally valid URI or user specified character string that links to another table providing detailed information, e.g. environmental or temporal parameters, descriptions on methods etc..",Examples: a combination of date and sampling region Occurrence,preparations,character,http://rs.tdwg.org/dwc/terms/preparations,,,,,v0.8,2017-07-07,,"For preserved specimens, a list (concatenated and separated) of preparations and preservation methods for the occurrence. ","Do not report procedures for measurement or sampling here (see samplingProtocol and measurementMethod). The recommended best practice is to separate the values with a vertical bar (' | '). Examples: ""fossil"", ""cast"", ""photograph"", ""DNA extract"", ""skin | ""skull | skeleton"", ""whole animal (ETOH) | tissue (EDTA)"". For discussion see http://terms.tdwg.org/wiki/dwc:preparations" -Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" +Occurrence,samplingProtocol,character,http://rs.tdwg.org/dwc/terms/samplingProtocol,,,,,v0.8,2017-07-07,,"The name of, reference to, or description of the method or protocol used for obtaining the specimen. ","Examples: ""UV light trap"", ""mist net"", ""bottom trawl"", ""ad hoc observation"", ""point count"", ""Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x"", ""Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp."", ""http://www.bsc-eoc.org/download/Owl.pdf"". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol" Occurrence,year,integer,http://rs.tdwg.org/dwc/terms/year,,,,,v0.8,2017-07-07,,"The four-digit year, at which the specimens were extracted or sampled. ","Example: ""2008"". For discussion see http://terms.tdwg.org/wiki/dwc:year" Occurrence,month,integer,http://rs.tdwg.org/dwc/terms/month,,,,,v0.8,2017-07-07,,"The ordinal month, in which the specimens were extracted or sampled. ","Examples: ""1"" (=January), ""10"" (=October). For discussion see http://terms.tdwg.org/wiki/dwc:month" Occurrence,day,integer,http://rs.tdwg.org/dwc/terms/day,,,,,v0.8,2017-07-07,,The integer day of the month on which the specimens were extracted or sampled. ,"Examples: ""9"", ""28"". For discussion see http://terms.tdwg.org/wiki/dwc:day" diff --git a/v0.9/ets.owl b/v0.9/ets.owl index 39b6940..f11c1c2 100644 --- a/v0.9/ets.owl +++ b/v0.9/ets.owl @@ -524,7 +524,7 @@ samplingProtocol The name of, reference to, or description of the method or protocol used for obtaining the specimen. - Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol + Examples: "UV light trap", "mist net", "bottom trawl", "ad hoc observation", "point count", "Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x", "Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.", "http://www.bsc-eoc.org/download/Owl.pdf". For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol 2017-07-07 @@ -932,4 +932,4 @@ recommended - \ No newline at end of file + diff --git a/v0.9/index.html b/v0.9/index.html index d3f5c70..6786301 100644 --- a/v0.9/index.html +++ b/v0.9/index.html @@ -4132,7 +4132,7 @@

samplingProtocol

Comment -Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, http://dx.doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol +Examples: “UV light trap”, “mist net”, “bottom trawl”, “ad hoc observation”, “point count”, “Penguins from space: faecal stains reveal the location of emperor penguin colonies, https://doi.org/10.1111/j.1466-8238.2009.00467.x”, “Takats et al. 2001. Guidelines for Nocturnal Owl Monitoring in North America. Beaverhill Bird Observatory and Bird Studies Canada, Edmonton, Alberta. 32 pp.”, “http://www.bsc-eoc.org/download/Owl.pdf”. For discussion see http://terms.tdwg.org/wiki/dwc:samplingProtocol valueType