From 0c9ac719a9c4976688a847aeda5fdfb6637be279 Mon Sep 17 00:00:00 2001
From: Matthew Akamatsu <akamatsm@uw.edu>
Date: Thu, 11 Sep 2025 22:28:43 -0700
Subject: [PATCH 1/3] Update RES - (GS)25-RBD suppressed RNA binding compared
 to the RBD alone.md

---
 ...RBD suppressed RNA binding compared to the RBD alone.md | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md
index 3cf24b9..2091552 100644
--- a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
+++ b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
@@ -6,4 +6,9 @@ rel_5nnUOb6wBzlAwAF2Wk-ts:
 ## Data / Plots
 ![[CleanShot 2025-09-11 at 16.55.46.png]]
 
-## Methods
\ No newline at end of file
+<img width="600" height="351" alt="image" src="https://github.com/user-attachments/assets/ced25da7-bb2d-4089-b134-b8dd4a0c4e08" />
+
+
+## Methods
+
+The model represents both amino acids and nucleotides as single beads with specific amino acid-amino acid and amino acid-nucleotide interactions. Folded domains are rigid, and both disordered regions and nucleic acids are dynamic.

From cacbe0b72c771d6cec8d7410a92044daa7926f4f Mon Sep 17 00:00:00 2001
From: Matthew Akamatsu <akamatsm@uw.edu>
Date: Thu, 11 Sep 2025 22:42:22 -0700
Subject: [PATCH 2/3] Update RES - (GS)25-RBD suppressed RNA binding compared
 to the RBD alone.md

---
 ...S)25-RBD suppressed RNA binding compared to the RBD alone.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md
index 2091552..4a7bfb8 100644
--- a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
+++ b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
@@ -6,7 +6,7 @@ rel_5nnUOb6wBzlAwAF2Wk-ts:
 ## Data / Plots
 ![[CleanShot 2025-09-11 at 16.55.46.png]]
 
-<img width="600" height="351" alt="image" src="https://github.com/user-attachments/assets/ced25da7-bb2d-4089-b134-b8dd4a0c4e08" />
+<img width="1192" height="904" alt="image" src="https://github.com/user-attachments/assets/10e5c777-6a3c-401f-aa8d-c302c1180954" />
 
 
 ## Methods

From 7aa919b013036c23ddf7832b050adbc64ff65145 Mon Sep 17 00:00:00 2001
From: Matthew Akamatsu <akamatsm@uw.edu>
Date: Thu, 11 Sep 2025 22:42:48 -0700
Subject: [PATCH 3/3] Update RES - (GS)25-RBD suppressed RNA binding compared
 to the RBD alone.md

---
 ...S)25-RBD suppressed RNA binding compared to the RBD alone.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md
index 4a7bfb8..2054770 100644
--- a/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
+++ b/DiscourseGraph/RES - (GS)25-RBD suppressed RNA binding compared to the RBD alone.md	
@@ -11,4 +11,4 @@ rel_5nnUOb6wBzlAwAF2Wk-ts:
 
 ## Methods
 
-The model represents both amino acids and nucleotides as single beads with specific amino acid-amino acid and amino acid-nucleotide interactions. Folded domains are rigid, and both disordered regions and nucleic acids are dynamic.
+> The model represents both amino acids and nucleotides as single beads with specific amino acid-amino acid and amino acid-nucleotide interactions. Folded domains are rigid, and both disordered regions and nucleic acids are dynamic.