Revert "feat: separate cortex-gui into standalone repository (#509)" (#510)

This reverts commit bc7d617.

Author: echobt

Cargo.lock

@@ -106,8 +106,7 @@ members = [
     # ==========================================================================
     # Desktop Application (GUI) - Tauri
     # ==========================================================================
-    # NOTE: cortex-gui has been moved to a separate repository: CortexLM/cortex-ide
-    # See: https://github.com/CortexLM/cortex-ide
+    "cortex-gui/src-tauri",
 ]
 
 [workspace.package]

Cargo.toml

@@ -0,0 +1,3 @@
+# API Configuration
+# Override the default API URL (defaults to http://127.0.0.1:4096)
+VITE_API_URL=http://127.0.0.1:4096

cortex-gui/.env.example

@@ -0,0 +1,34 @@
+# Dependencies
+node_modules/
+
+# Font Awesome Kit (junction to kit-a943e80cf4-desktop)
+public/kit-a943e80cf4-desktop/
+
+# Build outputs
+dist/
+src-tauri/target/
+
+# Logs
+*.log
+logs/
+
+# IDE
+.idea/
+.vscode/
+*.swp
+*.swo
+
+# OS files
+.DS_Store
+Thumbs.db
+
+# Environment
+.env
+.env.local
+.env.*.local
+
+# Tauri
+src-tauri/WixTools/
+src-tauri/icons/*.png
+src-tauri/icons/*.ico
+src-tauri/icons/*.icns

cortex-gui/.gitignore

@@ -0,0 +1,220 @@
+# Deep Audit Report: cortex-gui IDE
+
+## Executive Summary
+
+This audit identified several "Action Gaps" in the cortex-gui IDE where UI elements imply functionality that is missing, broken, or unlinked to the backend. The most significant findings were **29 missing backend commands** that were invoked from the frontend but had no corresponding Tauri command handler.
+
+**Status: FIXED** - This audit has been updated to reflect all fixes implemented through PR #364, #365, and the latest Deep Audit PR.
+
+---
+
+## 1. Critical Failures: Buttons/Elements with No Backend Implementation
+
+### 1.1 Missing Tauri Command Handlers - FIXED (Previous Update)
+
+The following commands were **implemented** in a previous update:
+
+| Command | Status | Implementation |
+|---------|--------|----------------|
+| `search_replace_all` | ✅ Fixed | Added in `src-tauri/src/search.rs` |
+| `search_replace_in_file` | ✅ Fixed | Added in `src-tauri/src/search.rs` |
+| `search_replace_match` | ✅ Fixed | Added in `src-tauri/src/search.rs` |
+| `notebook_execute_cell` | ✅ Fixed | Added in `src-tauri/src/notebook.rs` |
+| `notebook_interrupt_kernel` | ✅ Fixed | Added in `src-tauri/src/notebook.rs` |
+| `notebook_shutdown_kernel` | ✅ Fixed | Added in `src-tauri/src/notebook.rs` |
+| `notebook_start_kernel` | ✅ Fixed | Added in `src-tauri/src/notebook.rs` |
+| `terminate_cortex_process` | ✅ Fixed | Added in `src-tauri/src/process.rs` |
+| `git_branch_rename` | ✅ Fixed | Added to `src-tauri/src/git.rs` |
+| `git_reset_soft` | ✅ Fixed | Added to `src-tauri/src/git.rs` |
+| `git_clean` | ✅ Fixed | Added to `src-tauri/src/git.rs` |
+| `git_stage_lines` | ✅ Fixed | Added to `src-tauri/src/git.rs` |
+| `git_unstage_lines` | ✅ Fixed | Added to `src-tauri/src/git.rs` |
+| `git_remote_add` | ✅ Fixed | Alias added to `src-tauri/src/git.rs` |
+| `git_remote_remove` | ✅ Fixed | Alias added to `src-tauri/src/git.rs` |
+| `git_remote_rename` | ✅ Fixed | Alias added to `src-tauri/src/git.rs` |
+
+### 1.2 Missing Tauri Command Handlers - FIXED (This Update)
+
+The following commands were **implemented** in this audit update:
+
+| Command | Status | Implementation |
+|---------|--------|----------------|
+| `debug_terminate` | ✅ Fixed | Added in `src-tauri/src/dap/commands.rs` |
+| `debug_disconnect` | ✅ Fixed | Added in `src-tauri/src/dap/commands.rs` |
+| `debug_step_into_target` | ✅ Fixed | Added in `src-tauri/src/dap/commands.rs` |
+| `tasks_run_task` | ✅ Fixed | Added in `src-tauri/src/tasks.rs` (NEW MODULE) |
+| `tasks_list` | ✅ Fixed | Added in `src-tauri/src/tasks.rs` |
+| `tasks_get_config` | ✅ Fixed | Added in `src-tauri/src/tasks.rs` |
+| `shell_open` | ✅ Fixed | Added in `src-tauri/src/fs.rs` |
+| `toggle_devtools` | ✅ Fixed | Added in `src-tauri/src/window.rs` |
+
+### 1.3 Commands Fixed in Latest Deep Audit Update
+
+The following commands were **implemented** in this deep audit:
+
+| Command | Status | Implementation |
+|---------|--------|----------------|
+| `profiles_save` | ✅ Fixed | Added in `src-tauri/src/settings.rs` |
+| `profiles_load` | ✅ Fixed | Added in `src-tauri/src/settings.rs` |
+| `remote_forward_port` | ✅ Fixed | Added in `src-tauri/src/remote.rs` |
+| `remote_stop_forward` | ✅ Fixed | Added in `src-tauri/src/remote.rs` |
+| `rules_save_file` | ✅ Fixed | Added as alias in `src-tauri/src/rules_library.rs` |
+| `ssh_save_profile` | ✅ Fixed | Added in `src-tauri/src/ssh_terminal.rs` |
+| `ssh_delete_profile` | ✅ Fixed | Added in `src-tauri/src/ssh_terminal.rs` |
+| `ssh_generate_profile_id` | ✅ Fixed | Added in `src-tauri/src/ssh_terminal.rs` |
+| `ssh_list_profiles` | ✅ Fixed | Added in `src-tauri/src/ssh_terminal.rs` |
+| `testing_stop` | ✅ Fixed | Added in `src-tauri/src/testing.rs` |
+| `tunnel_close` | ✅ Fixed | Added in `src-tauri/src/remote.rs` |
+| `update_extension` | ✅ Fixed | Added in `src-tauri/src/extensions.rs` |
+
+### 1.4 Still Missing (Lower Priority)
+
+The following commands are still missing but are lower priority as they relate to features not yet fully implemented:
+
+| Command | File Location | Impact |
+|---------|--------------|--------|
+| `ai_cancel_stream` | AIContext.tsx:636 | AI streaming cannot be cancelled (commented out) |
+| `apply_workspace_edit` | editor/RenameWidget.tsx | LSP workspace edits (needs LSP integration) |
+| `devcontainer_*` | RemoteContext.tsx | DevContainer operations (feature WIP) |
+| `vscode_execute_*` | CommandContext.tsx | VS Code command execution |
+
+### 1.5 Empty Action Handlers (Acceptable)
+
+**File: DiagnosticsPanel.tsx:409**
+```typescript
+action: () => {},  // Divider item - intentionally empty
+```
+
+**File: OpenWithMenu.tsx:691**
+```typescript
+action: () => {},  // Separator item - intentionally empty
+```
+
+These are separators/dividers in menus and are acceptable.
+
+---
+
+## 2. Broken Bridges: Frontend/Backend Signature Mismatches - FIXED
+
+### 2.1 Command Name Mismatches - RESOLVED
+
+| Frontend Invoke | Backend Command | Status |
+|-----------------|-----------------|--------|
+| `git_remote_add` | `git_add_remote` | ✅ Alias added |
+| `git_remote_remove` | `git_remove_remote` | ✅ Alias added |
+| `git_remote_rename` | `git_rename_remote` | ✅ Alias added |
+| `testing_stop` | `testing_stop` | ✅ Now implemented properly |
+
+---
+
+## 3. UX Improvements: Missing Feedback (Unchanged)
+
+### 3.1 Missing Loading States
+
+| Component | Issue | Recommendation |
+|-----------|-------|----------------|
+| `AutoUpdateContext.tsx` | No progress indicator for update download | Add progress bar |
+| `ExtensionsContext.tsx` | Extension installation lacks progress | Add activity indicator |
+| `MultiRepoContext.tsx` | Git operations need loading states | Show spinner during operations |
+| `NotebookContext.tsx` | Kernel operations should show activity | Add kernel status indicator |
+
+### 3.2 Silent Error Handling
+
+Multiple components catch errors but don't propagate them to the user:
+
+**Pattern found:**
+```typescript
+.catch((e) => {
+  console.error("Operation failed:", e);
+  // No user notification!
+});
+```
+
+**Recommendation:** Replace with toast notifications:
+```typescript
+.catch((e) => {
+  notifications.show({ 
+    type: "error", 
+    title: "Operation failed", 
+    body: e.message 
+  });
+});
+```
+
+---
+
+## 4. Navigation & UI Integrity
+
+### 4.1 Activity Bar Items - All Working ✅
+
+All activity bar items have proper `onClick` handlers:
+- Explorer ✅
+- Search ✅
+- Source Control ✅
+- Debug ✅
+- Extensions ✅
+- Agents ✅
+- Factory ✅
+- Testing ✅
+- Remote ✅
+
+### 4.2 Menu Bar Actions - All Working ✅
+
+The `MenuBar.tsx` component has comprehensive menu items with proper actions.
+
+---
+
+## 5. Files Modified in This Fix
+
+### Previous Update
+1. **`src-tauri/src/search.rs`** (NEW) - Search and replace commands
+2. **`src-tauri/src/notebook.rs`** (NEW) - Notebook kernel commands
+3. **`src-tauri/src/process.rs`** (NEW) - Process management commands
+4. **`src-tauri/src/git.rs`** - Added missing git commands and aliases
+5. **`src-tauri/src/lib.rs`** - Registered all new commands
+
+### This Update (PR #364)
+1. **`src-tauri/src/tasks.rs`** (NEW) - VS Code-style tasks.json runner
+2. **`src-tauri/src/dap/commands.rs`** - Added debug_terminate, debug_disconnect, debug_step_into_target
+3. **`src-tauri/src/fs.rs`** - Added shell_open command
+4. **`src-tauri/src/window.rs`** - Added toggle_devtools command
+5. **`src-tauri/src/lib.rs`** - Registered all new commands
+
+### Deep Audit Update (PR #366)
+1. **`src-tauri/src/extensions.rs`** - Added update_extension command
+2. **`src-tauri/src/settings.rs`** - Added profiles_save and profiles_load commands
+3. **`src-tauri/src/remote.rs`** - Added remote_forward_port, remote_stop_forward, tunnel_close
+4. **`src-tauri/src/ssh_terminal.rs`** - Added SSH profile management commands
+5. **`src-tauri/src/rules_library.rs`** - Added rules_save_file alias
+6. **`src-tauri/src/testing.rs`** - Added testing_stop command
+7. **`src-tauri/src/notebook.rs`** - Fixed missing Emitter import
+8. **`src-tauri/src/search.rs`** - Fixed serde attribute issue in ReplaceMatchRequest
+9. **`src-tauri/src/lib.rs`** - Registered all new commands (12 additional commands)
+
+---
+
+## 6. Remaining Work (Future PRs)
+
+1. **DevContainer Support** - Full implementation of devcontainer_* commands
+2. **VSCode Compatibility** - vscode_execute_* commands for extension compatibility
+3. **AI Stream Cancellation** - ai_cancel_stream implementation
+4. **LSP Workspace Edits** - apply_workspace_edit for rename refactoring
+
+---
+
+## Appendix: Statistics
+
+- Total unique invoke commands in frontend: **214**
+- Backend commands registered: **542+**
+- Commands fixed in previous updates: **24**
+- Commands fixed in this deep audit: **12**
+- Commands still missing (low priority): **~4**
+
+---
+
+## Audit Details
+
+- **Date**: 2026-01-27
+- **Branch**: master
+- **Commit**: Deep audit fix PR
+- **Auditor**: AI-assisted deep audit