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chore: remove markdown files to reduce context size

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AGENTS.md
cortex-cli
- ANALYSIS_REPORT.md
- CHANGELOG.md
cortex-gui
- AUDIT_REPORT.md
- COMPREHENSIVE_FEATURE_ROADMAP.md
- DEEP_AUDIT_ACTION_GAPS.md
- ENHANCED_FEATURE_ROADMAP_2026.md
- FACTORY.md
- README.md
- src-tauri/window-vibrancy
  - .changes
    - readme.md
  - CHANGELOG.md
  - README.md
- src
  - ARCHITECTURE.md
  - components/factory
    - README.md
plugins-docs
- AGENTS.md
- README.md
- examples
  - README.md
- getting-started
- guides
- reference

`‎AGENTS.md‎`

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