From 59499f9c3383c1bac3ffb17b4f4040aad36c78c7 Mon Sep 17 00:00:00 2001 From: neuronflow <7048826+neuronflow@users.noreply.github.com> Date: Sat, 16 Aug 2025 12:13:10 +0200 Subject: [PATCH 1/4] include zenodo atlas record --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3dda476..e40f212 100644 --- a/README.md +++ b/README.md @@ -149,7 +149,7 @@ We also offer basic support for: As of now we do not offer inverse transforms for greedy and elastix. Please resort to ANTs or Niftyreg for this. ### Atlas Reference -We provide a range of different atlases, namely: +We provide a range of different atlases via [zenodo](https://zenodo.org/records/15927391), namely: - [SRI24](https://www.nitrc.org/frs/download.php/4502/sri24_anatomy_unstripped_nifti.zip) and its [skull-stripped version](https://www.nitrc.org/frs/download.php/4499/sri24_anatomy_nifti.zip) - A slightly modified SRI24 atlas as found in the BraTS challenges (also with a skull-stripped version) - MNI152: [MNI_ICBM_2009c_Nonlinear_Symmetric](https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/) From 5de59d87ac710ff772dbe89a10a5e701e5cdf6cd Mon Sep 17 00:00:00 2001 From: neuronflow <7048826+neuronflow@users.noreply.github.com> Date: Sat, 16 Aug 2025 12:21:12 +0200 Subject: [PATCH 2/4] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e40f212..b1e543e 100644 --- a/README.md +++ b/README.md @@ -151,11 +151,11 @@ As of now we do not offer inverse transforms for greedy and elastix. Please reso ### Atlas Reference We provide a range of different atlases via [zenodo](https://zenodo.org/records/15927391), namely: - [SRI24](https://www.nitrc.org/frs/download.php/4502/sri24_anatomy_unstripped_nifti.zip) and its [skull-stripped version](https://www.nitrc.org/frs/download.php/4499/sri24_anatomy_nifti.zip) -- A slightly modified SRI24 atlas as found in the BraTS challenges (also with a skull-stripped version) - MNI152: [MNI_ICBM_2009c_Nonlinear_Symmetric](https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/) -- A slightly modified MNI152 atlas as found in the BraTS challenge +- slightly modified MNI152 and SRI24 atlas versions as employed for the [BraTS challenge algorithms](https://github.com/BrainLesion/BraTS) -We also support supplying a custom atlas in NIfTI format +> [!NOTE] +> custom atlases of your choice in NIfTI format are also supported ### N4 Bias correction From 8a71a6948ceaf09e0c7c28e7d8b5a7925001376b Mon Sep 17 00:00:00 2001 From: neuronflow <7048826+neuronflow@users.noreply.github.com> Date: Sat, 16 Aug 2025 14:53:16 +0200 Subject: [PATCH 3/4] Update README.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b1e543e..e541162 100644 --- a/README.md +++ b/README.md @@ -155,7 +155,7 @@ We provide a range of different atlases via [zenodo](https://zenodo.org/records/ - slightly modified MNI152 and SRI24 atlas versions as employed for the [BraTS challenge algorithms](https://github.com/BrainLesion/BraTS) > [!NOTE] -> custom atlases of your choice in NIfTI format are also supported +> Custom atlases of your choice in NIfTI format are also supported ### N4 Bias correction From 4108bb90b05c13f218d664331cdaf65e682b296d Mon Sep 17 00:00:00 2001 From: neuronflow <7048826+neuronflow@users.noreply.github.com> Date: Sat, 16 Aug 2025 14:53:34 +0200 Subject: [PATCH 4/4] Update README.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index e541162..0771219 100644 --- a/README.md +++ b/README.md @@ -152,7 +152,7 @@ As of now we do not offer inverse transforms for greedy and elastix. Please reso We provide a range of different atlases via [zenodo](https://zenodo.org/records/15927391), namely: - [SRI24](https://www.nitrc.org/frs/download.php/4502/sri24_anatomy_unstripped_nifti.zip) and its [skull-stripped version](https://www.nitrc.org/frs/download.php/4499/sri24_anatomy_nifti.zip) - MNI152: [MNI_ICBM_2009c_Nonlinear_Symmetric](https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/) -- slightly modified MNI152 and SRI24 atlas versions as employed for the [BraTS challenge algorithms](https://github.com/BrainLesion/BraTS) +- Slightly modified MNI152 and SRI24 atlas versions as employed for the [BraTS challenge algorithms](https://github.com/BrainLesion/BraTS) > [!NOTE] > Custom atlases of your choice in NIfTI format are also supported