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Bugfix to KingInferenceStep and pedigree
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+3
-3
lines changed

2 files changed

+3
-3
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SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/pipeline/VariantProcessingStep.java

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -88,7 +88,7 @@ default String getDemographicsProviderName(PipelineStepProvider<?> provider, Pip
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return provider.getParameterByName(PedigreeToolParameterDescriptor.NAME).extractValue(job, provider, stepIdx, String.class);
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}
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default DemographicsProvider getDemographicsProvider(PipelineStepProvider<?> provider, PipelineJob job, int stepIdx)
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default @Nullable DemographicsProvider getDemographicsProvider(PipelineStepProvider<?> provider, PipelineJob job, int stepIdx)
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{
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if (PipelineJobService.get().getLocationType() != PipelineJobService.LocationType.WebServer)
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{

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/KingInferenceStep.java

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -31,14 +31,14 @@
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import java.util.ArrayList;
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import java.util.List;
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public class KingInferenceStep extends AbstractCommandPipelineStep<KingInferenceStep.KingWrapper> implements VariantProcessingStep, VariantProcessingStep.RequiresPedigree
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public class KingInferenceStep extends AbstractCommandPipelineStep<KingInferenceStep.KingWrapper> implements VariantProcessingStep
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{
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public KingInferenceStep(PipelineStepProvider<?> provider, PipelineContext ctx)
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{
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super(provider, ctx, new KingInferenceStep.KingWrapper(ctx.getLogger()));
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}
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public static class Provider extends AbstractVariantProcessingStepProvider<KingInferenceStep>
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public static class Provider extends AbstractVariantProcessingStepProvider<KingInferenceStep> implements VariantProcessingStep.SupportsPedigree
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{
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public Provider()
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{

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