Bugfix to GTF/GFF and jbrowse

bbimber · bbimber · commit 8b2c512886fc · 2026-02-03T07:43:19.000-08:00
diff --git a/jbrowse/src/org/labkey/jbrowse/model/JsonFile.java b/jbrowse/src/org/labkey/jbrowse/model/JsonFile.java
@@ -587,8 +587,7 @@ public boolean matchesTrackSelector(List<String> toTest)
 
     public String getJsonTrackId()
     {
-        final File finalLocation = getLocationOfProcessedTrack(false);
-        return finalLocation == null ? null : finalLocation.getName();
+        return getSourceFileName();
     }
 
     private JSONObject getBamOrCramTrack(Logger log, ExpData targetFile, ReferenceGenome rg)

Original file line number	Diff line number	Diff line change
`@@ -587,8 +587,7 @@ public boolean matchesTrackSelector(List<String> toTest)`
`587`	`587`
`588`	`588`	`public String getJsonTrackId()`
`589`	`589`	`{`
`590`		`- final File finalLocation = getLocationOfProcessedTrack(false);`
`591`		`- return finalLocation == null ? null : finalLocation.getName();`
	`590`	`+ return getSourceFileName();`
`592`	`591`	`}`
`593`	`592`
`594`	`593`	`private JSONObject getBamOrCramTrack(Logger log, ExpData targetFile, ReferenceGenome rg)`