Improve logging

Author: bbimber

OpenLdapSync/src/org/labkey/openldapsync/OpenLdapSyncController.java

@@ -125,7 +125,7 @@ public ApiResponse execute(LdapForm form, BindException errors) throws Exception
             }
             catch (LdapException e)
             {
-                _log.error(e);
+                _log.error(e.getMessage(), e);
                 errors.reject(ERROR_MSG, e.getMessage());
                 return null;
             }
@@ -528,7 +528,7 @@ public ApiResponse execute(Object form, BindException errors) throws Exception
             }
             catch (Exception e)
             {
-                _log.error(e);
+                _log.error(e.getMessage(), e);
                 errors.reject(ERROR_MSG, e.getMessage() == null ? "unable to connect to LDAP server" : e.getMessage());
                 return null;
             }

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisController.java

@@ -1191,7 +1191,7 @@ public ApiResponse execute(ValidateReadsetImportForm form, BindException errors)
             {
                 ExceptionUtil.logExceptionToMothership(getViewContext().getRequest(), e);
                 errors.reject(ERROR_MSG, e.getMessage());
-                _log.error(e);
+                _log.error(e.getMessage(), e);
                 return null;
             }
             return new ApiSimpleResponse(resultProperties);
@@ -4821,7 +4821,7 @@ public ApiResponse execute(ImportTracksForm form, BindException errors) throws E
                 catch (IOException e)
                 {
                     errors.reject(ERROR_MSG, e.getMessage());
-                    _log.error(e);
+                    _log.error(e.getMessage(), e);
 
                     return null;
                 }
@@ -4837,7 +4837,7 @@ public ApiResponse execute(ImportTracksForm form, BindException errors) throws E
             catch (PipelineValidationException e)
             {
                 errors.reject(ERROR_MSG, e.getMessage());
-                _log.error(e);
+                _log.error(e.getMessage(), e);
 
                 return null;
             }

SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceTriggerHelper.java

@@ -136,7 +136,7 @@ public String extractAASequence(int refNtId, List<List<Number>> exons, boolean i
             }
             catch (IOException e)
             {
-                _log.error(e);
+                _log.error(e.getMessage(), e);
                 return null;
             }
         }