Restore --group-add to docker

bbimber · bbimber · commit 333d25bf6542 · 2025-01-09T05:46:19.000-08:00
diff --git a/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/DockerWrapper.java b/SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/run/DockerWrapper.java
@@ -108,6 +108,7 @@ public void executeWithDocker(List<String> containerArgs, File workDir, Pipeline
             }
 
             writer.println("$DOCKER run --rm=true \\");
+            writer.println("\t--group-add keep-groups \\");
             if (_useLocalContainerStorage)
             {
                 getLogger().debug("Using local container storage: " + getLocalContainerDir().getPath());

Original file line number	Diff line number	Diff line change
`@@ -108,6 +108,7 @@ public void executeWithDocker(List<String> containerArgs, File workDir, Pipeline`
`108`	`108`	`}`
`109`	`109`
`110`	`110`	`writer.println("$DOCKER run --rm=true \\");`
	`111`	`+ writer.println("\t--group-add keep-groups \\");`
`111`	`112`	`if (_useLocalContainerStorage)`
`112`	`113`	`{`
`113`	`114`	`getLogger().debug("Using local container storage: " + getLocalContainerDir().getPath());`