This repository was archived by the owner on Oct 15, 2025. It is now read-only.
This repository was archived by the owner on Oct 15, 2025. It is now read-only.
Incompatible with "Hyperstack" tif file saved from ImageJ #183
Description
Hi everyone,
I would like to know how do I input the TIF file from ImageJ "Hyperstack"?
No matter how do I change the channel order, the Hyperstack -> Stack, or save it as OME-TIF, the pytorch_fnet always only recognizes one slice like below:
ValueError: Dataset item 0, component 0 shape torch.Size([1, 3, 480, 640]) incompatible with patch_shape [32, 64, 64]
I have tried to use numpy.reshape and numpy.moveaxis after reading my "Hyperstack" tif file using Tifffile package, but it still can not work.
Can anyone teach me how do I to input a tif file saved from ImageJ? Thanks so much!